Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.45
FOXA2Q9Y261 SLC35C1-201ENST00000314134 4171 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
FOXA2Q9Y261 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
FOXA2Q9Y261 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC12.27□□□□□ -0.45
FOXA2Q9Y261 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
FOXA2Q9Y261 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
FOXA2Q9Y261 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC12.27□□□□□ -0.45
FOXA2Q9Y261 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
FOXA2Q9Y261 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
FOXA2Q9Y261 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC12.27□□□□□ -0.45
FOXA2Q9Y261 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC12.27□□□□□ -0.45
FOXA2Q9Y261 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC12.27□□□□□ -0.45
FOXA2Q9Y261 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC12.27□□□□□ -0.45
FOXA2Q9Y261 AL589987.1-201ENST00000453380 819 ntBASIC12.27□□□□□ -0.45
FOXA2Q9Y261 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
FOXA2Q9Y261 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC12.27□□□□□ -0.45
FOXA2Q9Y261 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC12.27□□□□□ -0.45
FOXA2Q9Y261 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC12.27□□□□□ -0.45
FOXA2Q9Y261 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC12.27□□□□□ -0.45
FOXA2Q9Y261 RARRES2P5-201ENST00000564013 466 ntBASIC12.27□□□□□ -0.45
FOXA2Q9Y261 RRP7BP-205ENST00000566851 833 ntBASIC12.27□□□□□ -0.45
FOXA2Q9Y261 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC12.27□□□□□ -0.45
FOXA2Q9Y261 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC12.27□□□□□ -0.45
FOXA2Q9Y261 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC12.27□□□□□ -0.45
FOXA2Q9Y261 YTHDF3-AS1-201ENST00000603538 718 ntBASIC12.27□□□□□ -0.45
FOXA2Q9Y261 AL158212.4-201ENST00000624062 1286 ntBASIC12.27□□□□□ -0.45
FOXA2Q9Y261 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC12.27□□□□□ -0.45
FOXA2Q9Y261 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC12.27□□□□□ -0.45
FOXA2Q9Y261 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
FOXA2Q9Y261 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
FOXA2Q9Y261 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC12.27□□□□□ -0.45
FOXA2Q9Y261 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
FOXA2Q9Y261 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
FOXA2Q9Y261 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC12.27□□□□□ -0.45
FOXA2Q9Y261 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC12.27□□□□□ -0.45
FOXA2Q9Y261 TSC22D1-211ENST00000501704 4026 ntTSL 2 BASIC12.27□□□□□ -0.45
FOXA2Q9Y261 LRP8-201ENST00000306052 7648 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.45
FOXA2Q9Y261 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC12.27□□□□□ -0.45
FOXA2Q9Y261 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
FOXA2Q9Y261 AL391825.1-201ENST00000457671 1364 ntBASIC12.27□□□□□ -0.45
FOXA2Q9Y261 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
FOXA2Q9Y261 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC12.27□□□□□ -0.45
FOXA2Q9Y261 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC12.27□□□□□ -0.45
FOXA2Q9Y261 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
FOXA2Q9Y261 SYP-201ENST00000263233 2498 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
FOXA2Q9Y261 SPOCK3-201ENST00000357154 2986 ntAPPRIS ALT2 TSL 5 BASIC12.27□□□□□ -0.45
FOXA2Q9Y261 KIF17-201ENST00000247986 3969 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.45
FOXA2Q9Y261 SRSF8-201ENST00000587424 4028 ntAPPRIS P1 BASIC12.27□□□□□ -0.45
FOXA2Q9Y261 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC12.27□□□□□ -0.45
FOXA2Q9Y261 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC12.27□□□□□ -0.45
FOXA2Q9Y261 NUDT16-202ENST00000521288 6108 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
FOXA2Q9Y261 ARHGEF26-AS1-204ENST00000491862 2598 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
FOXA2Q9Y261 ATXN7-201ENST00000295900 7224 ntAPPRIS P3 TSL 1 (best) BASIC12.26□□□□□ -0.45
FOXA2Q9Y261 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
FOXA2Q9Y261 SELENON-203ENST00000374315 4212 ntAPPRIS ALT2 TSL 5 BASIC12.26□□□□□ -0.45
FOXA2Q9Y261 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC12.26□□□□□ -0.45
FOXA2Q9Y261 TTLL13P-202ENST00000438251 2738 ntAPPRIS P5 TSL 5 BASIC12.26□□□□□ -0.45
FOXA2Q9Y261 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
FOXA2Q9Y261 RGPD6-202ENST00000330331 2848 ntTSL 2 BASIC12.26□□□□□ -0.45
FOXA2Q9Y261 RGPD8-202ENST00000330575 2848 ntTSL 2 BASIC12.26□□□□□ -0.45
FOXA2Q9Y261 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
FOXA2Q9Y261 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC12.26□□□□□ -0.45
FOXA2Q9Y261 GPSM1-202ENST00000354753 3533 ntAPPRIS ALT2 TSL 5 BASIC12.26□□□□□ -0.45
FOXA2Q9Y261 SLC22A15-202ENST00000369503 4720 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
FOXA2Q9Y261 PTPRU-205ENST00000460170 5337 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
FOXA2Q9Y261 GTF2H2C-210ENST00000510979 2952 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
FOXA2Q9Y261 PCDHB14-201ENST00000239449 4828 ntAPPRIS P1 BASIC12.26□□□□□ -0.45
FOXA2Q9Y261 CENPO-202ENST00000380834 4386 ntAPPRIS P1 TSL 5 BASIC12.26□□□□□ -0.45
FOXA2Q9Y261 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC12.26□□□□□ -0.45
FOXA2Q9Y261 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC12.26□□□□□ -0.45
FOXA2Q9Y261 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
FOXA2Q9Y261 TLN1-201ENST00000314888 8823 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
FOXA2Q9Y261 AKAP2-203ENST00000434623 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
FOXA2Q9Y261 SYNRG-217ENST00000612223 8229 ntAPPRIS P4 TSL 1 (best) BASIC12.26□□□□□ -0.45
FOXA2Q9Y261 MROH1-209ENST00000534366 5092 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
FOXA2Q9Y261 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
FOXA2Q9Y261 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
FOXA2Q9Y261 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC12.26□□□□□ -0.45
FOXA2Q9Y261 AC087499.6-201ENST00000411576 835 ntBASIC12.26□□□□□ -0.45
FOXA2Q9Y261 GNAQP1-201ENST00000444815 1067 ntBASIC12.26□□□□□ -0.45
FOXA2Q9Y261 RHOA-206ENST00000454011 889 ntTSL 2 BASIC12.26□□□□□ -0.45
FOXA2Q9Y261 CD81-207ENST00000481687 890 ntTSL 2 BASIC12.26□□□□□ -0.45
FOXA2Q9Y261 AC004066.1-201ENST00000502488 802 ntBASIC12.26□□□□□ -0.45
FOXA2Q9Y261 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC12.26□□□□□ -0.45
FOXA2Q9Y261 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC12.26□□□□□ -0.45
FOXA2Q9Y261 AC023310.3-201ENST00000557027 670 ntBASIC12.26□□□□□ -0.45
FOXA2Q9Y261 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC12.26□□□□□ -0.45
FOXA2Q9Y261 AC100756.1-201ENST00000562736 682 ntBASIC12.26□□□□□ -0.45
FOXA2Q9Y261 AC138749.3-201ENST00000567691 622 ntBASIC12.26□□□□□ -0.45
FOXA2Q9Y261 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
FOXA2Q9Y261 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC12.26□□□□□ -0.45
FOXA2Q9Y261 AL132655.2-201ENST00000596276 594 ntBASIC12.26□□□□□ -0.45
FOXA2Q9Y261 AC116165.1-201ENST00000611806 668 ntBASIC12.26□□□□□ -0.45
FOXA2Q9Y261 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC12.26□□□□□ -0.45
FOXA2Q9Y261 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC12.26□□□□□ -0.45
FOXA2Q9Y261 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC12.26□□□□□ -0.45
FOXA2Q9Y261 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
FOXA2Q9Y261 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC12.26□□□□□ -0.45
FOXA2Q9Y261 AL360270.3-201ENST00000609118 1348 ntBASIC12.26□□□□□ -0.45
FOXA2Q9Y261 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC12.26□□□□□ -0.45
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms