Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
VPS4AQ9UN37 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC14.75□□□□□ -0.05
VPS4AQ9UN37 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC14.75□□□□□ -0.05
VPS4AQ9UN37 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC14.75□□□□□ -0.05
VPS4AQ9UN37 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC14.75□□□□□ -0.05
VPS4AQ9UN37 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC14.75□□□□□ -0.05
VPS4AQ9UN37 HPGD-202ENST00000296522 3027 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
VPS4AQ9UN37 MINDY2-203ENST00000559228 9238 ntAPPRIS P3 TSL 2 BASIC14.75□□□□□ -0.05
VPS4AQ9UN37 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC14.75□□□□□ -0.05
VPS4AQ9UN37 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC14.74□□□□□ -0.05
VPS4AQ9UN37 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
VPS4AQ9UN37 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
VPS4AQ9UN37 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
VPS4AQ9UN37 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC14.74□□□□□ -0.05
VPS4AQ9UN37 KATNBL1-201ENST00000256544 2723 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
VPS4AQ9UN37 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
VPS4AQ9UN37 APBA1-201ENST00000265381 6534 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
VPS4AQ9UN37 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
VPS4AQ9UN37 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC14.74□□□□□ -0.05
VPS4AQ9UN37 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
VPS4AQ9UN37 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC14.74□□□□□ -0.05
VPS4AQ9UN37 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC14.74□□□□□ -0.05
VPS4AQ9UN37 ARMCX4-202ENST00000423738 7424 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
VPS4AQ9UN37 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC14.74□□□□□ -0.05
VPS4AQ9UN37 DNAJC14-203ENST00000357606 3416 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
VPS4AQ9UN37 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC14.74□□□□□ -0.05
VPS4AQ9UN37 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC14.74□□□□□ -0.05
VPS4AQ9UN37 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
VPS4AQ9UN37 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
VPS4AQ9UN37 LINC00552-201ENST00000625151 2579 ntBASIC14.74□□□□□ -0.05
VPS4AQ9UN37 LANCL2-201ENST00000254770 4353 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
VPS4AQ9UN37 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
VPS4AQ9UN37 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC14.74□□□□□ -0.05
VPS4AQ9UN37 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
VPS4AQ9UN37 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
VPS4AQ9UN37 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC14.74□□□□□ -0.05
VPS4AQ9UN37 TARDBPP1-201ENST00000442013 1203 ntBASIC14.74□□□□□ -0.05
VPS4AQ9UN37 PTK7-212ENST00000476760 902 ntTSL 2 BASIC14.74□□□□□ -0.05
VPS4AQ9UN37 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
VPS4AQ9UN37 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
VPS4AQ9UN37 SDHAP3-202ENST00000515467 728 ntBASIC14.74□□□□□ -0.05
VPS4AQ9UN37 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC14.74□□□□□ -0.05
VPS4AQ9UN37 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC14.74□□□□□ -0.05
VPS4AQ9UN37 AL512361.1-201ENST00000554200 418 ntBASIC14.74□□□□□ -0.05
VPS4AQ9UN37 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC14.74□□□□□ -0.05
VPS4AQ9UN37 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC14.74□□□□□ -0.05
VPS4AQ9UN37 AC015936.2-201ENST00000593177 259 ntBASIC14.74□□□□□ -0.05
VPS4AQ9UN37 AC093726.1-201ENST00000608064 963 ntBASIC14.74□□□□□ -0.05
VPS4AQ9UN37 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
VPS4AQ9UN37 ARFGAP1-203ENST00000370283 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
VPS4AQ9UN37 HOXC11-202ENST00000546378 3261 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
VPS4AQ9UN37 TOX3-201ENST00000219746 3233 ntAPPRIS P4 TSL 2 BASIC14.74□□□□□ -0.05
VPS4AQ9UN37 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
VPS4AQ9UN37 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC14.74□□□□□ -0.05
VPS4AQ9UN37 AC245052.4-201ENST00000452097 4158 ntTSL 2 BASIC14.74□□□□□ -0.05
VPS4AQ9UN37 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
VPS4AQ9UN37 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC14.74□□□□□ -0.05
VPS4AQ9UN37 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC14.74□□□□□ -0.05
VPS4AQ9UN37 ZNF516-201ENST00000443185 8118 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
VPS4AQ9UN37 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC14.74□□□□□ -0.05
VPS4AQ9UN37 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC14.74□□□□□ -0.05
VPS4AQ9UN37 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
VPS4AQ9UN37 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
VPS4AQ9UN37 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
VPS4AQ9UN37 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
VPS4AQ9UN37 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC14.74□□□□□ -0.05
VPS4AQ9UN37 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
VPS4AQ9UN37 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC14.73□□□□□ -0.05
VPS4AQ9UN37 MAP3K4-201ENST00000348824 5295 ntAPPRIS ALT2 TSL 5 BASIC14.73□□□□□ -0.05
VPS4AQ9UN37 RDX-218ENST00000544551 4117 ntTSL 2 BASIC14.73□□□□□ -0.05
VPS4AQ9UN37 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
VPS4AQ9UN37 ANK1-201ENST00000265709 6379 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
VPS4AQ9UN37 SCUBE1-202ENST00000360835 9808 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
VPS4AQ9UN37 PPM1F-201ENST00000263212 5143 ntAPPRIS P2 TSL 1 (best) BASIC14.73□□□□□ -0.05
VPS4AQ9UN37 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
VPS4AQ9UN37 ADORA1-201ENST00000309502 2896 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
VPS4AQ9UN37 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC14.73□□□□□ -0.05
VPS4AQ9UN37 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC14.73□□□□□ -0.05
VPS4AQ9UN37 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
VPS4AQ9UN37 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
VPS4AQ9UN37 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC14.73□□□□□ -0.05
VPS4AQ9UN37 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC14.73□□□□□ -0.05
VPS4AQ9UN37 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
VPS4AQ9UN37 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
VPS4AQ9UN37 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
VPS4AQ9UN37 ACTBP11-201ENST00000436287 1126 ntBASIC14.73□□□□□ -0.05
VPS4AQ9UN37 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC14.73□□□□□ -0.05
VPS4AQ9UN37 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC14.73□□□□□ -0.05
VPS4AQ9UN37 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC14.73□□□□□ -0.05
VPS4AQ9UN37 ELK1P1-201ENST00000485699 580 ntBASIC14.73□□□□□ -0.05
VPS4AQ9UN37 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC14.73□□□□□ -0.05
VPS4AQ9UN37 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
VPS4AQ9UN37 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
VPS4AQ9UN37 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC14.73□□□□□ -0.05
VPS4AQ9UN37 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC14.73□□□□□ -0.05
VPS4AQ9UN37 MIR4538-201ENST00000581377 78 ntBASIC14.73□□□□□ -0.05
VPS4AQ9UN37 CTBP2P3-201ENST00000585629 1255 ntBASIC14.73□□□□□ -0.05
VPS4AQ9UN37 VWF-201ENST00000261405 8838 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
VPS4AQ9UN37 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC14.73□□□□□ -0.05
VPS4AQ9UN37 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC14.73□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms