Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 AC152010.1-201ENST00000415779 2006 ntBASIC16.15■□□□□ 0.18
SIX2Q9NPC8 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC16.15■□□□□ 0.18
SIX2Q9NPC8 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
SIX2Q9NPC8 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
SIX2Q9NPC8 WDR53-203ENST00000429115 683 ntTSL 2 BASIC16.15■□□□□ 0.18
SIX2Q9NPC8 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC16.15■□□□□ 0.18
SIX2Q9NPC8 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
SIX2Q9NPC8 AC007969.1-201ENST00000433675 447 ntBASIC16.15■□□□□ 0.18
SIX2Q9NPC8 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC16.15■□□□□ 0.18
SIX2Q9NPC8 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
SIX2Q9NPC8 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC16.15■□□□□ 0.18
SIX2Q9NPC8 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC16.15■□□□□ 0.18
SIX2Q9NPC8 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
SIX2Q9NPC8 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC16.15■□□□□ 0.18
SIX2Q9NPC8 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC16.15■□□□□ 0.18
SIX2Q9NPC8 INSC-208ENST00000530161 1702 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
SIX2Q9NPC8 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC16.15■□□□□ 0.18
SIX2Q9NPC8 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC16.15■□□□□ 0.18
SIX2Q9NPC8 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
SIX2Q9NPC8 MVK-214ENST00000629016 1591 ntTSL 5 BASIC16.15■□□□□ 0.18
SIX2Q9NPC8 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
SIX2Q9NPC8 XRCC1-201ENST00000262887 2802 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SIX2Q9NPC8 POU2F2-207ENST00000529067 2657 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
SIX2Q9NPC8 ALG1-204ENST00000588623 2671 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
SIX2Q9NPC8 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC16.15■□□□□ 0.18
SIX2Q9NPC8 TNIP1-214ENST00000522226 2238 ntAPPRIS P3 TSL 2 BASIC16.15■□□□□ 0.18
SIX2Q9NPC8 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SIX2Q9NPC8 LINC01230-201ENST00000625222 3017 ntBASIC16.15■□□□□ 0.18
SIX2Q9NPC8 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
SIX2Q9NPC8 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
SIX2Q9NPC8 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC16.15■□□□□ 0.18
SIX2Q9NPC8 CDKN1A-208ENST00000615513 2102 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
SIX2Q9NPC8 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC16.15■□□□□ 0.18
SIX2Q9NPC8 AC015656.1-201ENST00000624209 3578 ntBASIC16.15■□□□□ 0.18
SIX2Q9NPC8 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
SIX2Q9NPC8 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC16.14■□□□□ 0.18
SIX2Q9NPC8 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC16.14■□□□□ 0.18
SIX2Q9NPC8 SPOCK3-201ENST00000357154 2986 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
SIX2Q9NPC8 CCT3-201ENST00000295688 2150 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SIX2Q9NPC8 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SIX2Q9NPC8 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
SIX2Q9NPC8 GRK6P1-201ENST00000400595 1711 ntBASIC16.14■□□□□ 0.17
SIX2Q9NPC8 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
SIX2Q9NPC8 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC16.14■□□□□ 0.17
SIX2Q9NPC8 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC16.14■□□□□ 0.17
SIX2Q9NPC8 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC16.14■□□□□ 0.17
SIX2Q9NPC8 THY1-206ENST00000528522 2050 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
SIX2Q9NPC8 MINPP1-202ENST00000371996 2415 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SIX2Q9NPC8 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
SIX2Q9NPC8 MAGIX-208ENST00000616266 3295 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
SIX2Q9NPC8 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC16.14■□□□□ 0.17
SIX2Q9NPC8 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
SIX2Q9NPC8 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
SIX2Q9NPC8 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
SIX2Q9NPC8 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SIX2Q9NPC8 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
SIX2Q9NPC8 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SIX2Q9NPC8 SERF2-209ENST00000409646 559 ntTSL 4 BASIC16.14■□□□□ 0.17
SIX2Q9NPC8 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
SIX2Q9NPC8 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC16.14■□□□□ 0.17
SIX2Q9NPC8 TLE1P1-201ENST00000422965 589 ntBASIC16.14■□□□□ 0.17
SIX2Q9NPC8 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
SIX2Q9NPC8 CRB3P1-201ENST00000449338 276 ntBASIC16.14■□□□□ 0.17
SIX2Q9NPC8 KRT18P25-201ENST00000508931 1278 ntBASIC16.14■□□□□ 0.17
SIX2Q9NPC8 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC16.14■□□□□ 0.17
SIX2Q9NPC8 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC16.14■□□□□ 0.17
SIX2Q9NPC8 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
SIX2Q9NPC8 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
SIX2Q9NPC8 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SIX2Q9NPC8 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
SIX2Q9NPC8 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC16.14■□□□□ 0.17
SIX2Q9NPC8 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SIX2Q9NPC8 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
SIX2Q9NPC8 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
SIX2Q9NPC8 PTGES3-207ENST00000614328 2077 ntTSL 3 BASIC16.14■□□□□ 0.17
SIX2Q9NPC8 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC16.14■□□□□ 0.17
SIX2Q9NPC8 IL21R-AS1-201ENST00000563191 2615 ntTSL 2 BASIC16.14■□□□□ 0.17
SIX2Q9NPC8 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC16.14■□□□□ 0.17
SIX2Q9NPC8 CYB561-201ENST00000360793 3001 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SIX2Q9NPC8 ZBED8-202ENST00000523213 2484 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SIX2Q9NPC8 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SIX2Q9NPC8 MAX-219ENST00000618858 2141 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
SIX2Q9NPC8 ADAM15-204ENST00000359280 2874 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
SIX2Q9NPC8 ZNF655-201ENST00000252713 2535 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
SIX2Q9NPC8 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
SIX2Q9NPC8 DNAJC14-201ENST00000317269 3330 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SIX2Q9NPC8 PRAMEF25-202ENST00000619661 1840 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SIX2Q9NPC8 FRZB-201ENST00000295113 3162 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SIX2Q9NPC8 ABR-228ENST00000574437 3196 ntTSL 5 BASIC16.13■□□□□ 0.17
SIX2Q9NPC8 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
SIX2Q9NPC8 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SIX2Q9NPC8 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
SIX2Q9NPC8 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SIX2Q9NPC8 POM121L8P-201ENST00000417732 1281 ntBASIC16.13■□□□□ 0.17
SIX2Q9NPC8 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
SIX2Q9NPC8 POM121L9P-203ENST00000441984 1285 ntBASIC16.13■□□□□ 0.17
SIX2Q9NPC8 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SIX2Q9NPC8 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC16.13■□□□□ 0.17
SIX2Q9NPC8 TERF1P3-201ENST00000505638 1227 ntBASIC16.13■□□□□ 0.17
SIX2Q9NPC8 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC16.13■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 48.1 ms