Protein–RNA interactions for Protein: Q9BWH6

RPAP1, RNA polymerase II-associated protein 1, humanhuman

Predicted RBP Predictions only

Length 1,393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPAP1Q9BWH6 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
RPAP1Q9BWH6 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC18.29■□□□□ 0.52
RPAP1Q9BWH6 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
RPAP1Q9BWH6 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
RPAP1Q9BWH6 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
RPAP1Q9BWH6 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
RPAP1Q9BWH6 THEG-202ENST00000346878 1211 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
RPAP1Q9BWH6 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
RPAP1Q9BWH6 PPP1R14B-202ENST00000392210 600 ntTSL 3 BASIC18.29■□□□□ 0.52
RPAP1Q9BWH6 LSM5-207ENST00000410044 687 ntTSL 3 BASIC18.29■□□□□ 0.52
RPAP1Q9BWH6 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
RPAP1Q9BWH6 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
RPAP1Q9BWH6 HOMER2P2-201ENST00000451621 847 ntBASIC18.29■□□□□ 0.52
RPAP1Q9BWH6 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC18.29■□□□□ 0.52
RPAP1Q9BWH6 AC084859.1-201ENST00000533002 670 ntTSL 4 BASIC18.29■□□□□ 0.52
RPAP1Q9BWH6 C1R-202ENST00000536053 2347 ntTSL 2 BASIC18.29■□□□□ 0.52
RPAP1Q9BWH6 CYGB-203ENST00000589145 788 ntTSL 3 BASIC18.29■□□□□ 0.52
RPAP1Q9BWH6 FDPS-221ENST00000612683 1198 ntAPPRIS ALT1 TSL 5 BASIC18.29■□□□□ 0.52
RPAP1Q9BWH6 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
RPAP1Q9BWH6 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
RPAP1Q9BWH6 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
RPAP1Q9BWH6 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC18.28■□□□□ 0.52
RPAP1Q9BWH6 HILPDA-201ENST00000257696 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
RPAP1Q9BWH6 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
RPAP1Q9BWH6 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
RPAP1Q9BWH6 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
RPAP1Q9BWH6 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
RPAP1Q9BWH6 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
RPAP1Q9BWH6 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC18.28■□□□□ 0.52
RPAP1Q9BWH6 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC18.28■□□□□ 0.52
RPAP1Q9BWH6 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
RPAP1Q9BWH6 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
RPAP1Q9BWH6 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC18.28■□□□□ 0.52
RPAP1Q9BWH6 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC18.28■□□□□ 0.52
RPAP1Q9BWH6 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
RPAP1Q9BWH6 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
RPAP1Q9BWH6 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC18.28■□□□□ 0.52
RPAP1Q9BWH6 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
RPAP1Q9BWH6 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
RPAP1Q9BWH6 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
RPAP1Q9BWH6 RPS15-201ENST00000233609 534 ntTSL 2 BASIC18.28■□□□□ 0.52
RPAP1Q9BWH6 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
RPAP1Q9BWH6 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
RPAP1Q9BWH6 TEX13B-201ENST00000302917 1248 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
RPAP1Q9BWH6 CATSPERZ-201ENST00000328404 743 ntAPPRIS P5 TSL 1 (best) BASIC18.28■□□□□ 0.52
RPAP1Q9BWH6 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
RPAP1Q9BWH6 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
RPAP1Q9BWH6 AC004945.1-201ENST00000416738 983 ntBASIC18.28■□□□□ 0.52
RPAP1Q9BWH6 LINC01762-204ENST00000434879 436 ntTSL 2 BASIC18.28■□□□□ 0.52
RPAP1Q9BWH6 H2AFV-206ENST00000437072 589 ntTSL 4 BASIC18.28■□□□□ 0.52
RPAP1Q9BWH6 AC006003.1-201ENST00000448541 613 ntTSL 4 BASIC18.28■□□□□ 0.52
RPAP1Q9BWH6 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC18.28■□□□□ 0.52
RPAP1Q9BWH6 ARTN-209ENST00000479128 471 ntTSL 3 BASIC18.28■□□□□ 0.52
RPAP1Q9BWH6 SCARNA20.5-201ENST00000516991 142 ntBASIC18.28■□□□□ 0.52
RPAP1Q9BWH6 RPL27A-202ENST00000524496 558 ntTSL 3 BASIC18.28■□□□□ 0.52
RPAP1Q9BWH6 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC18.28■□□□□ 0.52
RPAP1Q9BWH6 AC009093.8-202ENST00000562902 677 ntTSL 2 BASIC18.28■□□□□ 0.52
RPAP1Q9BWH6 RPS15-205ENST00000586686 562 ntTSL 5 BASIC18.28■□□□□ 0.52
RPAP1Q9BWH6 RPS15-208ENST00000591804 711 ntTSL 5 BASIC18.28■□□□□ 0.52
RPAP1Q9BWH6 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
RPAP1Q9BWH6 DLX6-202ENST00000518156 2304 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
RPAP1Q9BWH6 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
RPAP1Q9BWH6 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
RPAP1Q9BWH6 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC18.28■□□□□ 0.52
RPAP1Q9BWH6 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
RPAP1Q9BWH6 RHD-204ENST00000417538 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
RPAP1Q9BWH6 AC005089.1-201ENST00000619486 2241 ntBASIC18.27■□□□□ 0.52
RPAP1Q9BWH6 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC18.27■□□□□ 0.52
RPAP1Q9BWH6 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC18.27■□□□□ 0.52
RPAP1Q9BWH6 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
RPAP1Q9BWH6 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC18.27■□□□□ 0.52
RPAP1Q9BWH6 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC18.27■□□□□ 0.52
RPAP1Q9BWH6 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.52
RPAP1Q9BWH6 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
RPAP1Q9BWH6 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
RPAP1Q9BWH6 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
RPAP1Q9BWH6 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
RPAP1Q9BWH6 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
RPAP1Q9BWH6 MRPL34-201ENST00000252602 968 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.51
RPAP1Q9BWH6 POLD4-201ENST00000312419 918 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
RPAP1Q9BWH6 MIR663B-201ENST00000408361 115 ntBASIC18.27■□□□□ 0.51
RPAP1Q9BWH6 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC18.27■□□□□ 0.51
RPAP1Q9BWH6 HSPB1P2-201ENST00000448722 546 ntBASIC18.27■□□□□ 0.51
RPAP1Q9BWH6 RCAN1-212ENST00000492600 935 ntTSL 2 BASIC18.27■□□□□ 0.51
RPAP1Q9BWH6 CNGA4-202ENST00000533426 936 ntTSL 2 BASIC18.27■□□□□ 0.51
RPAP1Q9BWH6 TMEM219-203ENST00000561899 1249 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.51
RPAP1Q9BWH6 AL096828.3-201ENST00000615354 462 ntBASIC18.27■□□□□ 0.51
RPAP1Q9BWH6 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
RPAP1Q9BWH6 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC18.27■□□□□ 0.51
RPAP1Q9BWH6 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.51
RPAP1Q9BWH6 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.51
RPAP1Q9BWH6 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
RPAP1Q9BWH6 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
RPAP1Q9BWH6 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
RPAP1Q9BWH6 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
RPAP1Q9BWH6 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC18.26■□□□□ 0.51
RPAP1Q9BWH6 TTLL13P-202ENST00000438251 2738 ntAPPRIS P5 TSL 5 BASIC18.26■□□□□ 0.51
RPAP1Q9BWH6 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
RPAP1Q9BWH6 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
RPAP1Q9BWH6 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms