Protein–RNA interactions for Protein: Q9BQ65

USB1, U6 snRNA phosphodiesterase, humanhuman

Known RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USB1Q9BQ65 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC13.71□□□□□ -0.21
USB1Q9BQ65 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
USB1Q9BQ65 NALCN-AS1-201ENST00000457843 2846 ntTSL 2 BASIC13.71□□□□□ -0.21
USB1Q9BQ65 AP004608.1-203ENST00000528482 3679 ntTSL 5 BASIC13.71□□□□□ -0.21
USB1Q9BQ65 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.21
USB1Q9BQ65 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
USB1Q9BQ65 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
USB1Q9BQ65 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
USB1Q9BQ65 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.21
USB1Q9BQ65 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC13.71□□□□□ -0.21
USB1Q9BQ65 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.21
USB1Q9BQ65 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC13.71□□□□□ -0.21
USB1Q9BQ65 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.21
USB1Q9BQ65 BOLA2P3-201ENST00000404566 256 ntBASIC13.71□□□□□ -0.21
USB1Q9BQ65 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC13.71□□□□□ -0.21
USB1Q9BQ65 SOCS2P1-201ENST00000417727 557 ntBASIC13.71□□□□□ -0.21
USB1Q9BQ65 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
USB1Q9BQ65 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
USB1Q9BQ65 MTND2P25-201ENST00000449028 610 ntBASIC13.71□□□□□ -0.21
USB1Q9BQ65 AC109992.2-201ENST00000460977 765 ntTSL 3 BASIC13.71□□□□□ -0.21
USB1Q9BQ65 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC13.71□□□□□ -0.21
USB1Q9BQ65 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC13.71□□□□□ -0.21
USB1Q9BQ65 AC139722.1-201ENST00000512502 782 ntTSL 3 BASIC13.71□□□□□ -0.21
USB1Q9BQ65 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC13.71□□□□□ -0.21
USB1Q9BQ65 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC13.71□□□□□ -0.21
USB1Q9BQ65 CTBP2P3-201ENST00000585629 1255 ntBASIC13.71□□□□□ -0.21
USB1Q9BQ65 AC093813.1-201ENST00000605066 256 ntBASIC13.71□□□□□ -0.21
USB1Q9BQ65 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.21
USB1Q9BQ65 DMPK-219ENST00000600757 3357 ntTSL 2 BASIC13.71□□□□□ -0.21
USB1Q9BQ65 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
USB1Q9BQ65 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
USB1Q9BQ65 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
USB1Q9BQ65 PTENP1-202ENST00000532280 3996 ntBASIC13.71□□□□□ -0.21
USB1Q9BQ65 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
USB1Q9BQ65 MAP2K1-201ENST00000307102 3410 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
USB1Q9BQ65 DENND1B-211ENST00000620048 8378 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.22
USB1Q9BQ65 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.22
USB1Q9BQ65 PRF1-202ENST00000441259 2533 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
USB1Q9BQ65 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
USB1Q9BQ65 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
USB1Q9BQ65 AC069224.1-201ENST00000566372 1715 ntBASIC13.7□□□□□ -0.22
USB1Q9BQ65 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
USB1Q9BQ65 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC13.7□□□□□ -0.22
USB1Q9BQ65 RER1-203ENST00000378513 3000 ntTSL 3 BASIC13.7□□□□□ -0.22
USB1Q9BQ65 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
USB1Q9BQ65 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC13.7□□□□□ -0.22
USB1Q9BQ65 USP36-201ENST00000312010 5234 ntAPPRIS P2 TSL 5 BASIC13.7□□□□□ -0.22
USB1Q9BQ65 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC13.7□□□□□ -0.22
USB1Q9BQ65 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
USB1Q9BQ65 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
USB1Q9BQ65 SLC20A2-208ENST00000520262 2992 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
USB1Q9BQ65 AC243964.3-201ENST00000623022 2028 ntBASIC13.7□□□□□ -0.22
USB1Q9BQ65 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
USB1Q9BQ65 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
USB1Q9BQ65 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC13.7□□□□□ -0.22
USB1Q9BQ65 OR8S1-201ENST00000310194 1080 ntBASIC13.7□□□□□ -0.22
USB1Q9BQ65 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
USB1Q9BQ65 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC13.7□□□□□ -0.22
USB1Q9BQ65 AC013410.2-201ENST00000422627 201 ntBASIC13.7□□□□□ -0.22
USB1Q9BQ65 AL024474.2-201ENST00000431309 501 ntTSL 3 BASIC13.7□□□□□ -0.22
USB1Q9BQ65 TTTY23B-201ENST00000442790 549 ntBASIC13.7□□□□□ -0.22
USB1Q9BQ65 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC13.7□□□□□ -0.22
USB1Q9BQ65 AC022784.5-201ENST00000522241 437 ntBASIC13.7□□□□□ -0.22
USB1Q9BQ65 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC13.7□□□□□ -0.22
USB1Q9BQ65 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC13.7□□□□□ -0.22
USB1Q9BQ65 AL359881.2-201ENST00000602973 570 ntBASIC13.7□□□□□ -0.22
USB1Q9BQ65 RPAP2P1-201ENST00000603626 1168 ntBASIC13.7□□□□□ -0.22
USB1Q9BQ65 WFDC1-204ENST00000613603 549 ntBASIC13.7□□□□□ -0.22
USB1Q9BQ65 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC13.7□□□□□ -0.22
USB1Q9BQ65 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC13.7□□□□□ -0.22
USB1Q9BQ65 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
USB1Q9BQ65 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
USB1Q9BQ65 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
USB1Q9BQ65 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC13.7□□□□□ -0.22
USB1Q9BQ65 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
USB1Q9BQ65 AC073347.1-201ENST00000421633 2643 ntBASIC13.7□□□□□ -0.22
USB1Q9BQ65 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC13.7□□□□□ -0.22
USB1Q9BQ65 AP005117.1-202ENST00000581724 1908 ntBASIC13.7□□□□□ -0.22
USB1Q9BQ65 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
USB1Q9BQ65 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC13.7□□□□□ -0.22
USB1Q9BQ65 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC13.7□□□□□ -0.22
USB1Q9BQ65 PTPRO-201ENST00000281171 5301 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
USB1Q9BQ65 TAB2-208ENST00000636456 3092 ntTSL 5 BASIC13.7□□□□□ -0.22
USB1Q9BQ65 C4A-259ENST00000498271 5269 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
USB1Q9BQ65 FLII-221ENST00000578558 2377 ntTSL 5 BASIC13.69□□□□□ -0.22
USB1Q9BQ65 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
USB1Q9BQ65 AC068888.1-207ENST00000546793 2863 ntTSL 2 BASIC13.69□□□□□ -0.22
USB1Q9BQ65 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC13.69□□□□□ -0.22
USB1Q9BQ65 PPFIA3-203ENST00000602351 4341 ntTSL 5 BASIC13.69□□□□□ -0.22
USB1Q9BQ65 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
USB1Q9BQ65 CARD10-203ENST00000406271 3127 ntTSL 2 BASIC13.69□□□□□ -0.22
USB1Q9BQ65 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
USB1Q9BQ65 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
USB1Q9BQ65 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC13.69□□□□□ -0.22
USB1Q9BQ65 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
USB1Q9BQ65 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
USB1Q9BQ65 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
USB1Q9BQ65 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC13.69□□□□□ -0.22
USB1Q9BQ65 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
USB1Q9BQ65 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 48.5 ms