Protein–RNA interactions for Protein: Q96PV0

SYNGAP1, Ras/Rap GTPase-activating protein SynGAP, humanhuman

Predictions only

Length 1,343 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1Q96PV0 BMS1P22-203ENST00000609679 552 ntTSL 4 BASIC17.11■□□□□ 0.33
SYNGAP1Q96PV0 CASP16P-204ENST00000635032 809 ntBASIC17.11■□□□□ 0.33
SYNGAP1Q96PV0 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SYNGAP1Q96PV0 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SYNGAP1Q96PV0 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SYNGAP1Q96PV0 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
SYNGAP1Q96PV0 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC17.11■□□□□ 0.33
SYNGAP1Q96PV0 AC144831.1-201ENST00000573312 2656 ntBASIC17.11■□□□□ 0.33
SYNGAP1Q96PV0 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC17.11■□□□□ 0.33
SYNGAP1Q96PV0 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC17.11■□□□□ 0.33
SYNGAP1Q96PV0 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SYNGAP1Q96PV0 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
SYNGAP1Q96PV0 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SYNGAP1Q96PV0 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC17.11■□□□□ 0.33
SYNGAP1Q96PV0 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SYNGAP1Q96PV0 RCHY1-202ENST00000380840 1735 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SYNGAP1Q96PV0 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC17.11■□□□□ 0.33
SYNGAP1Q96PV0 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
SYNGAP1Q96PV0 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC17.1■□□□□ 0.33
SYNGAP1Q96PV0 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SYNGAP1Q96PV0 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SYNGAP1Q96PV0 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
SYNGAP1Q96PV0 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SYNGAP1Q96PV0 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SYNGAP1Q96PV0 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SYNGAP1Q96PV0 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
SYNGAP1Q96PV0 FKBP4P6-201ENST00000457486 1332 ntBASIC17.1■□□□□ 0.33
SYNGAP1Q96PV0 DUSP13-208ENST00000478873 1335 ntTSL 5 BASIC17.1■□□□□ 0.33
SYNGAP1Q96PV0 IGHA2-202ENST00000497872 1320 ntAPPRIS P5 TSL 1 (best) BASIC17.1■□□□□ 0.33
SYNGAP1Q96PV0 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
SYNGAP1Q96PV0 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SYNGAP1Q96PV0 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC17.1■□□□□ 0.33
SYNGAP1Q96PV0 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
SYNGAP1Q96PV0 REXO1L5P-201ENST00000622260 2098 ntBASIC17.1■□□□□ 0.33
SYNGAP1Q96PV0 TPRKB-202ENST00000318190 819 ntTSL 5 BASIC17.1■□□□□ 0.33
SYNGAP1Q96PV0 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
SYNGAP1Q96PV0 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SYNGAP1Q96PV0 NME2-201ENST00000393183 568 ntTSL 2 BASIC17.1■□□□□ 0.33
SYNGAP1Q96PV0 CD8B-204ENST00000393759 1096 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SYNGAP1Q96PV0 AL121901.1-201ENST00000419613 366 ntTSL 3 BASIC17.1■□□□□ 0.33
SYNGAP1Q96PV0 GHSR-202ENST00000427970 912 ntBASIC17.1■□□□□ 0.33
SYNGAP1Q96PV0 PENK-202ENST00000451791 1029 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SYNGAP1Q96PV0 TUBB8P8-201ENST00000458717 1058 ntBASIC17.1■□□□□ 0.33
SYNGAP1Q96PV0 AC026434.2-201ENST00000506094 1078 ntBASIC17.1■□□□□ 0.33
SYNGAP1Q96PV0 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC17.1■□□□□ 0.33
SYNGAP1Q96PV0 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC17.1■□□□□ 0.33
SYNGAP1Q96PV0 RN7SL774P-201ENST00000577467 290 ntBASIC17.1■□□□□ 0.33
SYNGAP1Q96PV0 AC091544.8-201ENST00000619490 361 ntBASIC17.1■□□□□ 0.33
SYNGAP1Q96PV0 PLEKHB2-211ENST00000628582 1297 ntTSL 2 BASIC17.1■□□□□ 0.33
SYNGAP1Q96PV0 BID-213ENST00000615414 2236 ntTSL 5 BASIC17.1■□□□□ 0.33
SYNGAP1Q96PV0 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC17.1■□□□□ 0.33
SYNGAP1Q96PV0 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
SYNGAP1Q96PV0 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
SYNGAP1Q96PV0 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC17.1■□□□□ 0.33
SYNGAP1Q96PV0 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SYNGAP1Q96PV0 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SYNGAP1Q96PV0 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SYNGAP1Q96PV0 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SYNGAP1Q96PV0 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SYNGAP1Q96PV0 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
SYNGAP1Q96PV0 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
SYNGAP1Q96PV0 OSCP1-204ENST00000433045 1381 ntTSL 5 BASIC17.1■□□□□ 0.33
SYNGAP1Q96PV0 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SYNGAP1Q96PV0 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC17.1■□□□□ 0.33
SYNGAP1Q96PV0 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC17.1■□□□□ 0.33
SYNGAP1Q96PV0 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SYNGAP1Q96PV0 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SYNGAP1Q96PV0 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SYNGAP1Q96PV0 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC17.09■□□□□ 0.33
SYNGAP1Q96PV0 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SYNGAP1Q96PV0 AL360270.3-201ENST00000609118 1348 ntBASIC17.09■□□□□ 0.33
SYNGAP1Q96PV0 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SYNGAP1Q96PV0 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
SYNGAP1Q96PV0 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC17.09■□□□□ 0.33
SYNGAP1Q96PV0 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
SYNGAP1Q96PV0 MRPS12-201ENST00000308018 1207 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SYNGAP1Q96PV0 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC17.09■□□□□ 0.33
SYNGAP1Q96PV0 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC17.09■□□□□ 0.33
SYNGAP1Q96PV0 AC011742.3-201ENST00000439053 820 ntBASIC17.09■□□□□ 0.33
SYNGAP1Q96PV0 FOXP4-AS1-203ENST00000439386 404 ntTSL 3 BASIC17.09■□□□□ 0.33
SYNGAP1Q96PV0 BX324167.1-201ENST00000451118 805 ntTSL 5 BASIC17.09■□□□□ 0.33
SYNGAP1Q96PV0 EIF3M-203ENST00000524896 1207 ntTSL 2 BASIC17.09■□□□□ 0.33
SYNGAP1Q96PV0 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SYNGAP1Q96PV0 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
SYNGAP1Q96PV0 SPAG5-AS1-203ENST00000554154 491 ntTSL 2 BASIC17.09■□□□□ 0.33
SYNGAP1Q96PV0 AC106738.2-201ENST00000559802 557 ntTSL 4 BASIC17.09■□□□□ 0.33
SYNGAP1Q96PV0 SYT17-208ENST00000568433 812 ntTSL 3 BASIC17.09■□□□□ 0.33
SYNGAP1Q96PV0 AC011447.3-201ENST00000590606 722 ntTSL 3 BASIC17.09■□□□□ 0.33
SYNGAP1Q96PV0 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SYNGAP1Q96PV0 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SYNGAP1Q96PV0 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SYNGAP1Q96PV0 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
SYNGAP1Q96PV0 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SYNGAP1Q96PV0 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
SYNGAP1Q96PV0 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC17.09■□□□□ 0.33
SYNGAP1Q96PV0 TUBA3D-201ENST00000321253 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SYNGAP1Q96PV0 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC17.09■□□□□ 0.33
SYNGAP1Q96PV0 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SYNGAP1Q96PV0 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
SYNGAP1Q96PV0 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms