Protein–RNA interactions for Protein: Q96K76

USP47, Ubiquitin carboxyl-terminal hydrolase 47, humanhuman

Predictions only

Length 1,375 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP47Q96K76 TISP43-201ENST00000409793 538 ntTSL 4 BASIC20.98■□□□□ 0.95
USP47Q96K76 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC20.98■□□□□ 0.95
USP47Q96K76 ACTBP11-201ENST00000436287 1126 ntBASIC20.98■□□□□ 0.95
USP47Q96K76 RPL13AP20-201ENST00000459725 609 ntBASIC20.98■□□□□ 0.95
USP47Q96K76 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC20.98■□□□□ 0.95
USP47Q96K76 VPS18-202ENST00000558474 873 ntTSL 3 BASIC20.98■□□□□ 0.95
USP47Q96K76 AC120498.3-201ENST00000568884 542 ntTSL 4 BASIC20.98■□□□□ 0.95
USP47Q96K76 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC20.98■□□□□ 0.95
USP47Q96K76 AC099795.1-202ENST00000640492 759 ntTSL 5 BASIC20.98■□□□□ 0.95
USP47Q96K76 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
USP47Q96K76 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
USP47Q96K76 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC20.98■□□□□ 0.95
USP47Q96K76 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
USP47Q96K76 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC20.98■□□□□ 0.95
USP47Q96K76 SIGLEC12-203ENST00000598614 1434 ntTSL 5 BASIC20.98■□□□□ 0.95
USP47Q96K76 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC20.98■□□□□ 0.95
USP47Q96K76 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
USP47Q96K76 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC20.98■□□□□ 0.95
USP47Q96K76 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
USP47Q96K76 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
USP47Q96K76 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC20.98■□□□□ 0.95
USP47Q96K76 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC20.98■□□□□ 0.95
USP47Q96K76 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
USP47Q96K76 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC20.98■□□□□ 0.95
USP47Q96K76 FZR1-201ENST00000313639 1215 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
USP47Q96K76 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
USP47Q96K76 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC20.97■□□□□ 0.95
USP47Q96K76 CDC23-208ENST00000505120 455 ntTSL 3 BASIC20.97■□□□□ 0.95
USP47Q96K76 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC20.97■□□□□ 0.95
USP47Q96K76 AC023824.1-201ENST00000562945 2975 ntBASIC20.97■□□□□ 0.95
USP47Q96K76 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC20.97■□□□□ 0.95
USP47Q96K76 MIR4783-201ENST00000580343 82 ntBASIC20.97■□□□□ 0.95
USP47Q96K76 AC003070.2-201ENST00000589730 386 ntTSL 3 BASIC20.97■□□□□ 0.95
USP47Q96K76 AP001002.3-201ENST00000623482 206 ntBASIC20.97■□□□□ 0.95
USP47Q96K76 AL590644.3-201ENST00000635428 1228 ntTSL 5 BASIC20.97■□□□□ 0.95
USP47Q96K76 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
USP47Q96K76 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
USP47Q96K76 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
USP47Q96K76 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
USP47Q96K76 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
USP47Q96K76 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
USP47Q96K76 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC20.97■□□□□ 0.95
USP47Q96K76 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
USP47Q96K76 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
USP47Q96K76 ANKRD33-202ENST00000340970 1507 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
USP47Q96K76 SNRPN-202ENST00000390687 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
USP47Q96K76 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
USP47Q96K76 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC20.97■□□□□ 0.95
USP47Q96K76 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC20.97■□□□□ 0.95
USP47Q96K76 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
USP47Q96K76 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
USP47Q96K76 MRPL34-201ENST00000252602 968 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
USP47Q96K76 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
USP47Q96K76 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
USP47Q96K76 SNHG12-210ENST00000483436 682 ntTSL 3 BASIC20.97■□□□□ 0.95
USP47Q96K76 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC20.97■□□□□ 0.95
USP47Q96K76 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
USP47Q96K76 RNF41-210ENST00000552244 716 ntTSL 3 BASIC20.97■□□□□ 0.95
USP47Q96K76 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC20.97■□□□□ 0.95
USP47Q96K76 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC20.97■□□□□ 0.95
USP47Q96K76 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
USP47Q96K76 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
USP47Q96K76 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC20.96■□□□□ 0.95
USP47Q96K76 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC20.96■□□□□ 0.95
USP47Q96K76 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
USP47Q96K76 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
USP47Q96K76 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
USP47Q96K76 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
USP47Q96K76 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
USP47Q96K76 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
USP47Q96K76 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC20.96■□□□□ 0.95
USP47Q96K76 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
USP47Q96K76 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
USP47Q96K76 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
USP47Q96K76 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
USP47Q96K76 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
USP47Q96K76 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
USP47Q96K76 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
USP47Q96K76 LAMA4-203ENST00000368638 1061 ntTSL 2 BASIC20.96■□□□□ 0.95
USP47Q96K76 NME6-203ENST00000415644 849 ntTSL 2 BASIC20.96■□□□□ 0.95
USP47Q96K76 USB1-203ENST00000539737 1212 ntTSL 2 BASIC20.96■□□□□ 0.95
USP47Q96K76 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC20.96■□□□□ 0.95
USP47Q96K76 RN7SL560P-201ENST00000577943 264 ntBASIC20.96■□□□□ 0.95
USP47Q96K76 RN7SL219P-201ENST00000582872 296 ntBASIC20.96■□□□□ 0.95
USP47Q96K76 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
USP47Q96K76 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
USP47Q96K76 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC20.96■□□□□ 0.95
USP47Q96K76 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
USP47Q96K76 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
USP47Q96K76 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
USP47Q96K76 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC20.95■□□□□ 0.94
USP47Q96K76 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
USP47Q96K76 AL590440.2-201ENST00000641973 1595 ntBASIC20.95■□□□□ 0.94
USP47Q96K76 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
USP47Q96K76 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC20.95■□□□□ 0.94
USP47Q96K76 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
USP47Q96K76 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC20.95■□□□□ 0.94
USP47Q96K76 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
USP47Q96K76 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC20.95■□□□□ 0.94
USP47Q96K76 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC20.95■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 59.1 ms