Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC15.3■□□□□ 0.04
CHFRQ96EP1 SYT17-208ENST00000568433 812 ntTSL 3 BASIC15.3■□□□□ 0.04
CHFRQ96EP1 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC15.3■□□□□ 0.04
CHFRQ96EP1 ZNF586-206ENST00000599802 581 ntTSL 3 BASIC15.3■□□□□ 0.04
CHFRQ96EP1 SPCS2P2-201ENST00000603270 608 ntBASIC15.3■□□□□ 0.04
CHFRQ96EP1 SIRT2-219ENST00000613542 1170 ntTSL 5 BASIC15.3■□□□□ 0.04
CHFRQ96EP1 BID-213ENST00000615414 2236 ntTSL 5 BASIC15.3■□□□□ 0.04
CHFRQ96EP1 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC15.3■□□□□ 0.04
CHFRQ96EP1 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC15.3■□□□□ 0.04
CHFRQ96EP1 AL805961.1-203ENST00000641078 1258 ntBASIC15.3■□□□□ 0.04
CHFRQ96EP1 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
CHFRQ96EP1 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CHFRQ96EP1 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CHFRQ96EP1 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CHFRQ96EP1 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC15.3■□□□□ 0.04
CHFRQ96EP1 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CHFRQ96EP1 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CHFRQ96EP1 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
CHFRQ96EP1 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
CHFRQ96EP1 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CHFRQ96EP1 AL365203.3-201ENST00000609742 2057 ntBASIC15.29■□□□□ 0.04
CHFRQ96EP1 ZFHX2-205ENST00000615307 1972 ntTSL 2 BASIC15.29■□□□□ 0.04
CHFRQ96EP1 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CHFRQ96EP1 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CHFRQ96EP1 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
CHFRQ96EP1 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CHFRQ96EP1 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CHFRQ96EP1 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC15.29■□□□□ 0.04
CHFRQ96EP1 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CHFRQ96EP1 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CHFRQ96EP1 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CHFRQ96EP1 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CHFRQ96EP1 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC15.29■□□□□ 0.04
CHFRQ96EP1 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CHFRQ96EP1 AWAT1-201ENST00000374521 1365 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CHFRQ96EP1 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CHFRQ96EP1 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC15.29■□□□□ 0.04
CHFRQ96EP1 AK6-201ENST00000380818 1183 ntTSL 2 BASIC15.29■□□□□ 0.04
CHFRQ96EP1 FAM177A1-202ENST00000382406 858 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
CHFRQ96EP1 IGHV3-13-201ENST00000390602 430 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
CHFRQ96EP1 IGHV3-21-201ENST00000390607 430 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
CHFRQ96EP1 TSPO-203ENST00000396265 1075 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
CHFRQ96EP1 PUDPP3-201ENST00000445368 636 ntBASIC15.29■□□□□ 0.04
CHFRQ96EP1 AL596276.2-201ENST00000447525 331 ntBASIC15.29■□□□□ 0.04
CHFRQ96EP1 HLA-J-204ENST00000495278 958 ntBASIC15.29■□□□□ 0.04
CHFRQ96EP1 CDC23-208ENST00000505120 455 ntTSL 3 BASIC15.29■□□□□ 0.04
CHFRQ96EP1 GUSBP1-202ENST00000508260 1012 ntTSL 2 BASIC15.29■□□□□ 0.04
CHFRQ96EP1 SEC23A-204ENST00000548032 907 ntTSL 2 BASIC15.29■□□□□ 0.04
CHFRQ96EP1 AL928654.3-201ENST00000552675 445 ntTSL 3 BASIC15.29■□□□□ 0.04
CHFRQ96EP1 CMTM3-215ENST00000568477 687 ntTSL 3 BASIC15.29■□□□□ 0.04
CHFRQ96EP1 LINC01229-204ENST00000568751 720 ntTSL 3 BASIC15.29■□□□□ 0.04
CHFRQ96EP1 MIR5572-201ENST00000583188 137 ntBASIC15.29■□□□□ 0.04
CHFRQ96EP1 RPS15-202ENST00000585665 467 ntTSL 3 BASIC15.29■□□□□ 0.04
CHFRQ96EP1 AC132192.2-201ENST00000596206 1147 ntBASIC15.29■□□□□ 0.04
CHFRQ96EP1 TUBB4A-212ENST00000601152 590 ntTSL 4 BASIC15.29■□□□□ 0.04
CHFRQ96EP1 HDDC2-204ENST00000608295 879 ntTSL 5 BASIC15.29■□□□□ 0.04
CHFRQ96EP1 IGHV1OR21-1-201ENST00000622028 353 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
CHFRQ96EP1 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC15.29■□□□□ 0.04
CHFRQ96EP1 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CHFRQ96EP1 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
CHFRQ96EP1 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC15.29■□□□□ 0.04
CHFRQ96EP1 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC15.29■□□□□ 0.04
CHFRQ96EP1 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
CHFRQ96EP1 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
CHFRQ96EP1 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
CHFRQ96EP1 PLA1A-205ENST00000494440 1775 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CHFRQ96EP1 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC15.28■□□□□ 0.04
CHFRQ96EP1 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CHFRQ96EP1 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC15.28■□□□□ 0.04
CHFRQ96EP1 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC15.28■□□□□ 0.04
CHFRQ96EP1 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC15.28■□□□□ 0.04
CHFRQ96EP1 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CHFRQ96EP1 FUK-207ENST00000571514 3054 ntTSL 2 BASIC15.28■□□□□ 0.04
CHFRQ96EP1 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC15.28■□□□□ 0.04
CHFRQ96EP1 AC012508.2-201ENST00000567613 1472 ntBASIC15.28■□□□□ 0.04
CHFRQ96EP1 ELAVL1-205ENST00000596459 1473 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
CHFRQ96EP1 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC15.28■□□□□ 0.04
CHFRQ96EP1 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
CHFRQ96EP1 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CHFRQ96EP1 API5-202ENST00000420461 2009 ntTSL 2 BASIC15.28■□□□□ 0.04
CHFRQ96EP1 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CHFRQ96EP1 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC15.28■□□□□ 0.04
CHFRQ96EP1 NFIC-211ENST00000641145 8399 ntBASIC15.28■□□□□ 0.04
CHFRQ96EP1 SPAG11A-203ENST00000351436 534 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CHFRQ96EP1 NUDT1-203ENST00000356714 662 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CHFRQ96EP1 SPAG11B-204ENST00000361111 534 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CHFRQ96EP1 UFM1-202ENST00000379649 846 ntTSL 4 BASIC15.28■□□□□ 0.04
CHFRQ96EP1 NUDT1-204ENST00000397046 712 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CHFRQ96EP1 AL645608.5-201ENST00000398216 443 ntTSL 3 BASIC15.28■□□□□ 0.04
CHFRQ96EP1 GSTK1-202ENST00000409500 888 ntTSL 2 BASIC15.28■□□□□ 0.04
CHFRQ96EP1 TPT1-AS1-203ENST00000412946 744 ntTSL 3 BASIC15.28■□□□□ 0.04
CHFRQ96EP1 AC007274.2-201ENST00000421675 662 ntBASIC15.28■□□□□ 0.04
CHFRQ96EP1 PDIA3P2-201ENST00000428073 158 ntBASIC15.28■□□□□ 0.04
CHFRQ96EP1 AC092800.1-201ENST00000449492 579 ntTSL 2 BASIC15.28■□□□□ 0.04
CHFRQ96EP1 MPRIPP1-201ENST00000452433 1089 ntBASIC15.28■□□□□ 0.04
CHFRQ96EP1 PMP22-206ENST00000494511 872 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CHFRQ96EP1 AC124301.1-201ENST00000524885 602 ntTSL 3 BASIC15.28■□□□□ 0.04
CHFRQ96EP1 AC127024.2-201ENST00000581019 789 ntTSL 5 BASIC15.28■□□□□ 0.04
CHFRQ96EP1 AC018635.2-201ENST00000608625 364 ntBASIC15.28■□□□□ 0.04
CHFRQ96EP1 AP000346.4-201ENST00000614827 381 ntBASIC15.28■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 68.7 ms