Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 UBR2-201ENST00000372899 7857 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
ERCC4Q92889 UBR2-202ENST00000372901 7857 ntAPPRIS ALT1 TSL 5 BASIC17.22■□□□□ 0.35
ERCC4Q92889 ZDHHC3-201ENST00000296127 3101 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
ERCC4Q92889 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
ERCC4Q92889 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
ERCC4Q92889 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
ERCC4Q92889 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
ERCC4Q92889 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC17.22■□□□□ 0.35
ERCC4Q92889 AC004967.1-201ENST00000453589 447 ntBASIC17.22■□□□□ 0.35
ERCC4Q92889 AC027369.6-201ENST00000525520 931 ntBASIC17.22■□□□□ 0.35
ERCC4Q92889 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC17.22■□□□□ 0.35
ERCC4Q92889 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC17.22■□□□□ 0.35
ERCC4Q92889 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
ERCC4Q92889 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC17.22■□□□□ 0.35
ERCC4Q92889 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC17.22■□□□□ 0.35
ERCC4Q92889 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC17.22■□□□□ 0.35
ERCC4Q92889 AL844908.2-201ENST00000609461 460 ntBASIC17.22■□□□□ 0.35
ERCC4Q92889 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC17.22■□□□□ 0.35
ERCC4Q92889 AC073592.8-201ENST00000624126 511 ntBASIC17.22■□□□□ 0.35
ERCC4Q92889 AC079781.4-201ENST00000641908 219 ntBASIC17.22■□□□□ 0.35
ERCC4Q92889 TDRD5-204ENST00000444136 3946 ntAPPRIS ALT1 TSL 1 (best) BASIC17.22■□□□□ 0.35
ERCC4Q92889 AC087386.2-201ENST00000623212 4637 ntBASIC17.22■□□□□ 0.35
ERCC4Q92889 GRAMD4P3-201ENST00000621665 1669 ntBASIC17.22■□□□□ 0.35
ERCC4Q92889 GPR37-201ENST00000303921 3021 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
ERCC4Q92889 SMTN-202ENST00000347557 3130 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
ERCC4Q92889 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC17.22■□□□□ 0.35
ERCC4Q92889 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
ERCC4Q92889 CDKL3-206ENST00000521118 2160 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
ERCC4Q92889 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC17.22■□□□□ 0.35
ERCC4Q92889 RREB1-202ENST00000349384 7440 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
ERCC4Q92889 ARHGEF26-AS1-204ENST00000491862 2598 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
ERCC4Q92889 LARGE1-201ENST00000354992 4409 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
ERCC4Q92889 OSBPL5-202ENST00000348039 2798 ntTSL 2 BASIC17.22■□□□□ 0.35
ERCC4Q92889 PAPOLA-223ENST00000557320 3264 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
ERCC4Q92889 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
ERCC4Q92889 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
ERCC4Q92889 FUK-201ENST00000288078 4081 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
ERCC4Q92889 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC17.21■□□□□ 0.35
ERCC4Q92889 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC17.21■□□□□ 0.35
ERCC4Q92889 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
ERCC4Q92889 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
ERCC4Q92889 WNT3A-201ENST00000284523 2932 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
ERCC4Q92889 TMPRSS9-201ENST00000332578 3331 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
ERCC4Q92889 MAP2K1-201ENST00000307102 3410 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
ERCC4Q92889 PPP1R26P4-201ENST00000619065 3527 ntBASIC17.21■□□□□ 0.35
ERCC4Q92889 SMAD2-202ENST00000356825 10445 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
ERCC4Q92889 ADGRG2-207ENST00000379869 4768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
ERCC4Q92889 PKIA-202ENST00000396418 4163 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
ERCC4Q92889 CRLS1-201ENST00000378863 3958 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
ERCC4Q92889 CCNB1-201ENST00000256442 2169 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
ERCC4Q92889 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
ERCC4Q92889 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
ERCC4Q92889 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
ERCC4Q92889 LILRP1-201ENST00000444199 1370 ntBASIC17.21■□□□□ 0.35
ERCC4Q92889 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC17.21■□□□□ 0.35
ERCC4Q92889 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC17.21■□□□□ 0.35
ERCC4Q92889 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC17.21■□□□□ 0.35
ERCC4Q92889 AC125807.1-201ENST00000483097 614 ntBASIC17.21■□□□□ 0.35
ERCC4Q92889 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC17.21■□□□□ 0.35
ERCC4Q92889 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC17.21■□□□□ 0.35
ERCC4Q92889 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC17.21■□□□□ 0.35
ERCC4Q92889 GPX4-206ENST00000588919 803 ntTSL 2 BASIC17.21■□□□□ 0.35
ERCC4Q92889 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC17.21■□□□□ 0.35
ERCC4Q92889 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
ERCC4Q92889 KMT2E-202ENST00000311117 6874 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
ERCC4Q92889 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
ERCC4Q92889 CHRNA7-201ENST00000306901 6181 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
ERCC4Q92889 BAIAP3-216ENST00000628027 4732 ntTSL 5 BASIC17.21■□□□□ 0.35
ERCC4Q92889 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
ERCC4Q92889 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC17.21■□□□□ 0.35
ERCC4Q92889 SPRED1-201ENST00000299084 7780 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
ERCC4Q92889 GAS2L2-202ENST00000604641 3014 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.34
ERCC4Q92889 SLC38A9-202ENST00000396865 2927 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
ERCC4Q92889 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
ERCC4Q92889 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
ERCC4Q92889 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
ERCC4Q92889 AXL-201ENST00000301178 4737 ntAPPRIS P4 TSL 1 (best) BASIC17.2■□□□□ 0.34
ERCC4Q92889 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
ERCC4Q92889 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC17.2■□□□□ 0.34
ERCC4Q92889 MPZL1-203ENST00000392121 3421 ntTSL 2 BASIC17.2■□□□□ 0.34
ERCC4Q92889 CLASRP-204ENST00000544944 2769 ntAPPRIS ALT2 TSL 2 BASIC17.2■□□□□ 0.34
ERCC4Q92889 NAXD-201ENST00000309957 2659 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
ERCC4Q92889 SYT5-201ENST00000354308 3792 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
ERCC4Q92889 PRDM4-201ENST00000228437 4210 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
ERCC4Q92889 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC17.2■□□□□ 0.34
ERCC4Q92889 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
ERCC4Q92889 OSBPL7-211ENST00000613735 2836 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
ERCC4Q92889 MAPKBP1-215ENST00000514566 5394 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
ERCC4Q92889 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC17.2■□□□□ 0.34
ERCC4Q92889 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC17.2■□□□□ 0.34
ERCC4Q92889 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC17.2■□□□□ 0.34
ERCC4Q92889 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC17.2■□□□□ 0.34
ERCC4Q92889 AL589987.1-201ENST00000453380 819 ntBASIC17.2■□□□□ 0.34
ERCC4Q92889 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC17.2■□□□□ 0.34
ERCC4Q92889 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC17.2■□□□□ 0.34
ERCC4Q92889 RAB35-202ENST00000534951 939 ntTSL 2 BASIC17.2■□□□□ 0.34
ERCC4Q92889 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
ERCC4Q92889 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC17.2■□□□□ 0.34
ERCC4Q92889 AC079781.5-202ENST00000641784 3743 ntBASIC17.2■□□□□ 0.34
ERCC4Q92889 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms