Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC15.72■□□□□ 0.11
ATG4AQ8WYN0 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
ATG4AQ8WYN0 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
ATG4AQ8WYN0 ITSN2-203ENST00000406921 4563 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
ATG4AQ8WYN0 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
ATG4AQ8WYN0 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
ATG4AQ8WYN0 CYTH3-201ENST00000350796 4505 ntAPPRIS P2 TSL 1 (best) BASIC15.72■□□□□ 0.11
ATG4AQ8WYN0 CYTH3-202ENST00000396741 4508 ntAPPRIS ALT1 TSL 5 BASIC15.72■□□□□ 0.11
ATG4AQ8WYN0 DDR1-271ENST00000513240 2882 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
ATG4AQ8WYN0 TMBIM4-202ENST00000358230 2952 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
ATG4AQ8WYN0 AC004890.2-205ENST00000416232 2804 ntTSL 2 BASIC15.72■□□□□ 0.11
ATG4AQ8WYN0 ANKMY1-204ENST00000391987 3221 ntTSL 5 BASIC15.72■□□□□ 0.11
ATG4AQ8WYN0 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
ATG4AQ8WYN0 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC15.71■□□□□ 0.11
ATG4AQ8WYN0 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
ATG4AQ8WYN0 AC093525.8-201ENST00000624099 1342 ntBASIC15.71■□□□□ 0.11
ATG4AQ8WYN0 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
ATG4AQ8WYN0 NOP14-203ENST00000416614 3538 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
ATG4AQ8WYN0 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC15.71■□□□□ 0.11
ATG4AQ8WYN0 DRD5P1-201ENST00000456605 1438 ntBASIC15.71■□□□□ 0.11
ATG4AQ8WYN0 AC015802.1-201ENST00000588104 1449 ntBASIC15.71■□□□□ 0.11
ATG4AQ8WYN0 PRPH-201ENST00000257860 3245 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
ATG4AQ8WYN0 AC136759.1-202ENST00000530858 2194 ntBASIC15.71■□□□□ 0.11
ATG4AQ8WYN0 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
ATG4AQ8WYN0 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
ATG4AQ8WYN0 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
ATG4AQ8WYN0 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
ATG4AQ8WYN0 HLA-DRB6-201ENST00000411500 1235 ntBASIC15.71■□□□□ 0.11
ATG4AQ8WYN0 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC15.71■□□□□ 0.11
ATG4AQ8WYN0 FTH1-202ENST00000526640 786 ntTSL 2 BASIC15.71■□□□□ 0.11
ATG4AQ8WYN0 STOM-203ENST00000538954 1257 ntTSL 5 BASIC15.71■□□□□ 0.11
ATG4AQ8WYN0 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC15.71■□□□□ 0.11
ATG4AQ8WYN0 SRD5A3P1-201ENST00000603021 949 ntBASIC15.71■□□□□ 0.11
ATG4AQ8WYN0 AC107373.2-201ENST00000607735 490 ntBASIC15.71■□□□□ 0.11
ATG4AQ8WYN0 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC15.71■□□□□ 0.11
ATG4AQ8WYN0 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
ATG4AQ8WYN0 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC15.71■□□□□ 0.11
ATG4AQ8WYN0 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC15.71■□□□□ 0.11
ATG4AQ8WYN0 POU6F1-208ENST00000550824 2664 ntTSL 5 BASIC15.71■□□□□ 0.11
ATG4AQ8WYN0 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC15.71■□□□□ 0.11
ATG4AQ8WYN0 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
ATG4AQ8WYN0 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
ATG4AQ8WYN0 MBD1-212ENST00000585672 2532 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
ATG4AQ8WYN0 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC15.71■□□□□ 0.11
ATG4AQ8WYN0 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC15.71■□□□□ 0.1
ATG4AQ8WYN0 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
ATG4AQ8WYN0 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.1
ATG4AQ8WYN0 GRK6-211ENST00000528793 2571 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
ATG4AQ8WYN0 ZNF664-202ENST00000392404 4262 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
ATG4AQ8WYN0 SLC41A1-201ENST00000367137 4997 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
ATG4AQ8WYN0 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
ATG4AQ8WYN0 CACNA2D1-201ENST00000356253 3858 ntTSL 5 BASIC15.7■□□□□ 0.1
ATG4AQ8WYN0 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC15.7■□□□□ 0.1
ATG4AQ8WYN0 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
ATG4AQ8WYN0 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC15.7■□□□□ 0.1
ATG4AQ8WYN0 CNOT3-201ENST00000221232 2852 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
ATG4AQ8WYN0 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
ATG4AQ8WYN0 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC15.7■□□□□ 0.1
ATG4AQ8WYN0 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC15.7■□□□□ 0.1
ATG4AQ8WYN0 TRIM65-201ENST00000269383 3439 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
ATG4AQ8WYN0 TGIF2-202ENST00000373874 3432 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
ATG4AQ8WYN0 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC15.7■□□□□ 0.1
ATG4AQ8WYN0 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC15.7■□□□□ 0.1
ATG4AQ8WYN0 OBSL1-202ENST00000373873 3297 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
ATG4AQ8WYN0 RTEL1-201ENST00000318100 4676 ntTSL 2 BASIC15.7■□□□□ 0.1
ATG4AQ8WYN0 DCUN1D3-201ENST00000324344 6162 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
ATG4AQ8WYN0 LRRFIP1-204ENST00000392000 3365 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
ATG4AQ8WYN0 BARHL2-201ENST00000370445 1979 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
ATG4AQ8WYN0 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC15.7■□□□□ 0.1
ATG4AQ8WYN0 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC15.7■□□□□ 0.1
ATG4AQ8WYN0 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC15.7■□□□□ 0.1
ATG4AQ8WYN0 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC15.7■□□□□ 0.1
ATG4AQ8WYN0 RASL12-203ENST00000434605 982 ntTSL 2 BASIC15.7■□□□□ 0.1
ATG4AQ8WYN0 AL353779.1-201ENST00000434793 351 ntBASIC15.7■□□□□ 0.1
ATG4AQ8WYN0 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC15.7■□□□□ 0.1
ATG4AQ8WYN0 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC15.7■□□□□ 0.1
ATG4AQ8WYN0 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC15.7■□□□□ 0.1
ATG4AQ8WYN0 AC135586.1-201ENST00000539323 574 ntBASIC15.7■□□□□ 0.1
ATG4AQ8WYN0 FUNDC2-201ENST00000369498 6455 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
ATG4AQ8WYN0 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC15.7■□□□□ 0.1
ATG4AQ8WYN0 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
ATG4AQ8WYN0 NRDC-201ENST00000352171 3691 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
ATG4AQ8WYN0 AC018665.1-201ENST00000622927 1362 ntBASIC15.7■□□□□ 0.1
ATG4AQ8WYN0 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
ATG4AQ8WYN0 API5-203ENST00000455725 2257 ntTSL 2 BASIC15.7■□□□□ 0.1
ATG4AQ8WYN0 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
ATG4AQ8WYN0 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
ATG4AQ8WYN0 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC15.7■□□□□ 0.1
ATG4AQ8WYN0 GRIK5-201ENST00000262895 3493 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
ATG4AQ8WYN0 PLXDC1-201ENST00000315392 6252 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
ATG4AQ8WYN0 NUBPL-201ENST00000281081 3049 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
ATG4AQ8WYN0 CRCP-203ENST00000395326 3009 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
ATG4AQ8WYN0 NAXD-201ENST00000309957 2659 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
ATG4AQ8WYN0 PRMT7-202ENST00000441236 2204 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
ATG4AQ8WYN0 CAPN1-224ENST00000533129 2792 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
ATG4AQ8WYN0 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
ATG4AQ8WYN0 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
ATG4AQ8WYN0 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
ATG4AQ8WYN0 NADSYN1-216ENST00000530055 2416 ntTSL 2 BASIC15.69■□□□□ 0.1
ATG4AQ8WYN0 BAIAP2-220ENST00000575712 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 51.1 ms