Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 RN7SKP175-201ENST00000408472 289 ntBASIC15.36■□□□□ 0.05
SHROOM3Q8TF72 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC15.36■□□□□ 0.05
SHROOM3Q8TF72 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
SHROOM3Q8TF72 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
SHROOM3Q8TF72 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC15.36■□□□□ 0.05
SHROOM3Q8TF72 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
SHROOM3Q8TF72 MFF-223ENST00000524634 647 ntTSL 2 BASIC15.36■□□□□ 0.05
SHROOM3Q8TF72 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
SHROOM3Q8TF72 AC007333.1-201ENST00000568286 630 ntTSL 3 BASIC15.36■□□□□ 0.05
SHROOM3Q8TF72 RN7SL190P-201ENST00000582519 257 ntBASIC15.36■□□□□ 0.05
SHROOM3Q8TF72 ECM1P1-201ENST00000604092 1279 ntBASIC15.36■□□□□ 0.05
SHROOM3Q8TF72 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
SHROOM3Q8TF72 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
SHROOM3Q8TF72 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC15.36■□□□□ 0.05
SHROOM3Q8TF72 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC15.36■□□□□ 0.05
SHROOM3Q8TF72 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
SHROOM3Q8TF72 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
SHROOM3Q8TF72 AC003102.2-201ENST00000589195 1469 ntBASIC15.36■□□□□ 0.05
SHROOM3Q8TF72 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
SHROOM3Q8TF72 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC15.36■□□□□ 0.05
SHROOM3Q8TF72 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC15.36■□□□□ 0.05
SHROOM3Q8TF72 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC15.36■□□□□ 0.05
SHROOM3Q8TF72 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
SHROOM3Q8TF72 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
SHROOM3Q8TF72 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC15.36■□□□□ 0.05
SHROOM3Q8TF72 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
SHROOM3Q8TF72 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
SHROOM3Q8TF72 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC15.36■□□□□ 0.05
SHROOM3Q8TF72 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
SHROOM3Q8TF72 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC15.36■□□□□ 0.05
SHROOM3Q8TF72 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
SHROOM3Q8TF72 TLE1P1-201ENST00000422965 589 ntBASIC15.36■□□□□ 0.05
SHROOM3Q8TF72 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC15.36■□□□□ 0.05
SHROOM3Q8TF72 FAM8A4P-201ENST00000435433 1213 ntBASIC15.36■□□□□ 0.05
SHROOM3Q8TF72 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC15.36■□□□□ 0.05
SHROOM3Q8TF72 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
SHROOM3Q8TF72 APOPT1-207ENST00000477116 906 ntTSL 3 BASIC15.36■□□□□ 0.05
SHROOM3Q8TF72 CRYGN-205ENST00000491928 698 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
SHROOM3Q8TF72 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
SHROOM3Q8TF72 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
SHROOM3Q8TF72 TECR-220ENST00000600083 1204 ntTSL 2 BASIC15.36■□□□□ 0.05
SHROOM3Q8TF72 AC244517.4-201ENST00000624549 580 ntTSL 4 BASIC15.36■□□□□ 0.05
SHROOM3Q8TF72 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC15.36■□□□□ 0.05
SHROOM3Q8TF72 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
SHROOM3Q8TF72 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
SHROOM3Q8TF72 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC15.36■□□□□ 0.05
SHROOM3Q8TF72 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC15.36■□□□□ 0.05
SHROOM3Q8TF72 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
SHROOM3Q8TF72 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
SHROOM3Q8TF72 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
SHROOM3Q8TF72 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC15.36■□□□□ 0.05
SHROOM3Q8TF72 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
SHROOM3Q8TF72 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC15.36■□□□□ 0.05
SHROOM3Q8TF72 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
SHROOM3Q8TF72 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
SHROOM3Q8TF72 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
SHROOM3Q8TF72 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
SHROOM3Q8TF72 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
SHROOM3Q8TF72 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
SHROOM3Q8TF72 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
SHROOM3Q8TF72 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
SHROOM3Q8TF72 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
SHROOM3Q8TF72 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC15.35■□□□□ 0.05
SHROOM3Q8TF72 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC15.35■□□□□ 0.05
SHROOM3Q8TF72 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
SHROOM3Q8TF72 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC15.35■□□□□ 0.05
SHROOM3Q8TF72 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC15.35■□□□□ 0.05
SHROOM3Q8TF72 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC15.35■□□□□ 0.05
SHROOM3Q8TF72 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
SHROOM3Q8TF72 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
SHROOM3Q8TF72 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
SHROOM3Q8TF72 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
SHROOM3Q8TF72 AC114812.1-204ENST00000449669 728 ntBASIC15.35■□□□□ 0.05
SHROOM3Q8TF72 KRT90P-201ENST00000549264 1064 ntBASIC15.35■□□□□ 0.05
SHROOM3Q8TF72 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
SHROOM3Q8TF72 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC15.35■□□□□ 0.05
SHROOM3Q8TF72 TMEM219-203ENST00000561899 1249 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
SHROOM3Q8TF72 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC15.35■□□□□ 0.05
SHROOM3Q8TF72 AC233724.13-201ENST00000598383 410 ntBASIC15.35■□□□□ 0.05
SHROOM3Q8TF72 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
SHROOM3Q8TF72 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC15.35■□□□□ 0.05
SHROOM3Q8TF72 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC15.35■□□□□ 0.05
SHROOM3Q8TF72 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC15.35■□□□□ 0.05
SHROOM3Q8TF72 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
SHROOM3Q8TF72 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
SHROOM3Q8TF72 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
SHROOM3Q8TF72 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
SHROOM3Q8TF72 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
SHROOM3Q8TF72 AC023908.3-201ENST00000564211 3047 ntBASIC15.35■□□□□ 0.05
SHROOM3Q8TF72 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC15.35■□□□□ 0.05
SHROOM3Q8TF72 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC15.35■□□□□ 0.05
SHROOM3Q8TF72 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC15.35■□□□□ 0.05
SHROOM3Q8TF72 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC15.35■□□□□ 0.05
SHROOM3Q8TF72 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
SHROOM3Q8TF72 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC15.35■□□□□ 0.05
SHROOM3Q8TF72 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC15.35■□□□□ 0.05
SHROOM3Q8TF72 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC15.35■□□□□ 0.05
SHROOM3Q8TF72 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
SHROOM3Q8TF72 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
SHROOM3Q8TF72 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 40.6 ms