Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 IGHV1OR21-1-201ENST00000622028 353 ntAPPRIS P1 BASIC15.56■□□□□ 0.08
NPAS3Q8IXF0 AC090515.2-201ENST00000500929 1396 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
NPAS3Q8IXF0 BRMS1-201ENST00000359957 1445 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
NPAS3Q8IXF0 DLX4-202ENST00000411890 1404 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
NPAS3Q8IXF0 MYL6-219ENST00000551589 1438 ntAPPRIS ALT1 TSL 2 BASIC15.56■□□□□ 0.08
NPAS3Q8IXF0 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
NPAS3Q8IXF0 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
NPAS3Q8IXF0 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
NPAS3Q8IXF0 PLCXD2-204ENST00000477665 1721 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
NPAS3Q8IXF0 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC15.56■□□□□ 0.08
NPAS3Q8IXF0 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
NPAS3Q8IXF0 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
NPAS3Q8IXF0 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
NPAS3Q8IXF0 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC15.56■□□□□ 0.08
NPAS3Q8IXF0 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
NPAS3Q8IXF0 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC15.55■□□□□ 0.08
NPAS3Q8IXF0 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC15.55■□□□□ 0.08
NPAS3Q8IXF0 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC15.55■□□□□ 0.08
NPAS3Q8IXF0 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC15.55■□□□□ 0.08
NPAS3Q8IXF0 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
NPAS3Q8IXF0 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC15.55■□□□□ 0.08
NPAS3Q8IXF0 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC15.55■□□□□ 0.08
NPAS3Q8IXF0 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
NPAS3Q8IXF0 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC15.55■□□□□ 0.08
NPAS3Q8IXF0 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC15.55■□□□□ 0.08
NPAS3Q8IXF0 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
NPAS3Q8IXF0 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC15.55■□□□□ 0.08
NPAS3Q8IXF0 UBXN11-207ENST00000374223 1312 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
NPAS3Q8IXF0 WASHC3-201ENST00000240079 916 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
NPAS3Q8IXF0 RAB36-202ENST00000341989 936 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
NPAS3Q8IXF0 NRM-202ENST00000376420 1228 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
NPAS3Q8IXF0 PFDN6-204ENST00000395131 884 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
NPAS3Q8IXF0 PSMG3-203ENST00000404674 774 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
NPAS3Q8IXF0 AP000356.1-201ENST00000438893 364 ntTSL 3 BASIC15.55■□□□□ 0.08
NPAS3Q8IXF0 FAM58BP-201ENST00000439056 645 ntBASIC15.55■□□□□ 0.08
NPAS3Q8IXF0 AC092800.1-201ENST00000449492 579 ntTSL 2 BASIC15.55■□□□□ 0.08
NPAS3Q8IXF0 AC234782.1-201ENST00000451950 919 ntBASIC15.55■□□□□ 0.08
NPAS3Q8IXF0 ATP6V1G2-210ENST00000483251 662 ntTSL 3 BASIC15.55■□□□□ 0.08
NPAS3Q8IXF0 PRSS30P-205ENST00000506153 699 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
NPAS3Q8IXF0 TP53AIP1-204ENST00000530777 363 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
NPAS3Q8IXF0 AC103988.2-201ENST00000561804 725 ntBASIC15.55■□□□□ 0.08
NPAS3Q8IXF0 AC020922.3-201ENST00000595064 547 ntBASIC15.55■□□□□ 0.08
NPAS3Q8IXF0 AL132994.2-201ENST00000603120 687 ntBASIC15.55■□□□□ 0.08
NPAS3Q8IXF0 AL353770.1-201ENST00000614915 403 ntBASIC15.55■□□□□ 0.08
NPAS3Q8IXF0 AL589935.2-201ENST00000616471 1231 ntBASIC15.55■□□□□ 0.08
NPAS3Q8IXF0 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC15.55■□□□□ 0.08
NPAS3Q8IXF0 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
NPAS3Q8IXF0 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
NPAS3Q8IXF0 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
NPAS3Q8IXF0 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
NPAS3Q8IXF0 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC15.55■□□□□ 0.08
NPAS3Q8IXF0 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
NPAS3Q8IXF0 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC15.55■□□□□ 0.08
NPAS3Q8IXF0 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC15.55■□□□□ 0.08
NPAS3Q8IXF0 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC15.55■□□□□ 0.08
NPAS3Q8IXF0 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC15.54■□□□□ 0.08
NPAS3Q8IXF0 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC15.54■□□□□ 0.08
NPAS3Q8IXF0 PLA1A-205ENST00000494440 1775 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
NPAS3Q8IXF0 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
NPAS3Q8IXF0 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC15.54■□□□□ 0.08
NPAS3Q8IXF0 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
NPAS3Q8IXF0 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
NPAS3Q8IXF0 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
NPAS3Q8IXF0 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC15.54■□□□□ 0.08
NPAS3Q8IXF0 AC011270.2-201ENST00000624293 2550 ntBASIC15.54■□□□□ 0.08
NPAS3Q8IXF0 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
NPAS3Q8IXF0 AC012508.2-201ENST00000567613 1472 ntBASIC15.54■□□□□ 0.08
NPAS3Q8IXF0 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC15.54■□□□□ 0.08
NPAS3Q8IXF0 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
NPAS3Q8IXF0 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
NPAS3Q8IXF0 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
NPAS3Q8IXF0 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC15.54■□□□□ 0.08
NPAS3Q8IXF0 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
NPAS3Q8IXF0 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
NPAS3Q8IXF0 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
NPAS3Q8IXF0 C6orf52-201ENST00000259983 619 ntAPPRIS P2 TSL 5 BASIC15.54■□□□□ 0.08
NPAS3Q8IXF0 RN7SKP214-201ENST00000364208 315 ntBASIC15.54■□□□□ 0.08
NPAS3Q8IXF0 DPCD-202ENST00000370151 858 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
NPAS3Q8IXF0 UFM1-202ENST00000379649 846 ntTSL 4 BASIC15.54■□□□□ 0.08
NPAS3Q8IXF0 HNRNPA1P41-201ENST00000397777 928 ntBASIC15.54■□□□□ 0.08
NPAS3Q8IXF0 AC073316.1-202ENST00000402115 988 ntTSL 5 BASIC15.54■□□□□ 0.08
NPAS3Q8IXF0 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
NPAS3Q8IXF0 Z82214.1-201ENST00000419643 988 ntTSL 3 BASIC15.54■□□□□ 0.08
NPAS3Q8IXF0 ISCA2P1-201ENST00000425548 448 ntBASIC15.54■□□□□ 0.08
NPAS3Q8IXF0 VDAC1P1-201ENST00000439229 848 ntBASIC15.54■□□□□ 0.08
NPAS3Q8IXF0 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC15.54■□□□□ 0.08
NPAS3Q8IXF0 AP001547.1-201ENST00000527440 374 ntTSL 3 BASIC15.54■□□□□ 0.08
NPAS3Q8IXF0 C12orf73-211ENST00000553183 660 ntAPPRIS P1 TSL 3 BASIC15.54■□□□□ 0.08
NPAS3Q8IXF0 CDIP1-202ENST00000562334 1205 ntTSL 2 BASIC15.54■□□□□ 0.08
NPAS3Q8IXF0 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC15.54■□□□□ 0.08
NPAS3Q8IXF0 AC132192.2-201ENST00000596206 1147 ntBASIC15.54■□□□□ 0.08
NPAS3Q8IXF0 SRD5A3-AS1-211ENST00000599135 737 ntTSL 5 BASIC15.54■□□□□ 0.08
NPAS3Q8IXF0 NEAT1-203ENST00000601801 487 ntTSL 4 BASIC15.54■□□□□ 0.08
NPAS3Q8IXF0 AP001043.1-205ENST00000623098 1033 ntTSL 5 BASIC15.54■□□□□ 0.08
NPAS3Q8IXF0 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
NPAS3Q8IXF0 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC15.54■□□□□ 0.08
NPAS3Q8IXF0 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
NPAS3Q8IXF0 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
NPAS3Q8IXF0 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC15.54■□□□□ 0.08
NPAS3Q8IXF0 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 61.9 ms