Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC16.72■□□□□ 0.27
CCDC60Q8IWA6 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC60Q8IWA6 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC60Q8IWA6 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC60Q8IWA6 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC16.72■□□□□ 0.27
CCDC60Q8IWA6 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC60Q8IWA6 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC16.72■□□□□ 0.27
CCDC60Q8IWA6 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC60Q8IWA6 AC053503.1-201ENST00000429882 519 ntTSL 3 BASIC16.72■□□□□ 0.27
CCDC60Q8IWA6 POM121L10P-201ENST00000436994 1285 ntBASIC16.72■□□□□ 0.27
CCDC60Q8IWA6 RPL27A-202ENST00000524496 558 ntTSL 3 BASIC16.72■□□□□ 0.27
CCDC60Q8IWA6 LRRC37A6P-204ENST00000575554 573 ntTSL 3 BASIC16.72■□□□□ 0.27
CCDC60Q8IWA6 MIR4783-201ENST00000580343 82 ntBASIC16.72■□□□□ 0.27
CCDC60Q8IWA6 MIR3615-201ENST00000581999 87 ntBASIC16.72■□□□□ 0.27
CCDC60Q8IWA6 AL590644.3-201ENST00000635428 1228 ntTSL 5 BASIC16.72■□□□□ 0.27
CCDC60Q8IWA6 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC16.72■□□□□ 0.27
CCDC60Q8IWA6 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
CCDC60Q8IWA6 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC16.72■□□□□ 0.27
CCDC60Q8IWA6 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC60Q8IWA6 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC60Q8IWA6 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC60Q8IWA6 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC16.72■□□□□ 0.27
CCDC60Q8IWA6 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
CCDC60Q8IWA6 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
CCDC60Q8IWA6 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC60Q8IWA6 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CCDC60Q8IWA6 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC16.71■□□□□ 0.27
CCDC60Q8IWA6 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
CCDC60Q8IWA6 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
CCDC60Q8IWA6 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
CCDC60Q8IWA6 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC16.71■□□□□ 0.27
CCDC60Q8IWA6 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC16.71■□□□□ 0.27
CCDC60Q8IWA6 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CCDC60Q8IWA6 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CCDC60Q8IWA6 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.27
CCDC60Q8IWA6 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CCDC60Q8IWA6 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
CCDC60Q8IWA6 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC16.71■□□□□ 0.27
CCDC60Q8IWA6 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CCDC60Q8IWA6 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CCDC60Q8IWA6 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
CCDC60Q8IWA6 SLURP2-201ENST00000317543 599 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CCDC60Q8IWA6 AL022323.1-201ENST00000366110 957 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CCDC60Q8IWA6 VAMP4-202ENST00000367740 1193 ntAPPRIS ALT1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CCDC60Q8IWA6 FAM24B-202ENST00000368898 745 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CCDC60Q8IWA6 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC16.71■□□□□ 0.27
CCDC60Q8IWA6 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CCDC60Q8IWA6 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CCDC60Q8IWA6 AL354877.1-201ENST00000424412 413 ntBASIC16.71■□□□□ 0.27
CCDC60Q8IWA6 HNRNPA1P63-201ENST00000427917 963 ntBASIC16.71■□□□□ 0.27
CCDC60Q8IWA6 SELENOW-201ENST00000509570 881 ntTSL 5 BASIC16.71■□□□□ 0.27
CCDC60Q8IWA6 AC025154.1-201ENST00000552806 560 ntTSL 5 BASIC16.71■□□□□ 0.27
CCDC60Q8IWA6 GNG2-209ENST00000555472 908 ntAPPRIS P1 TSL 3 BASIC16.71■□□□□ 0.27
CCDC60Q8IWA6 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC16.71■□□□□ 0.27
CCDC60Q8IWA6 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC16.71■□□□□ 0.27
CCDC60Q8IWA6 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC16.71■□□□□ 0.27
CCDC60Q8IWA6 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
CCDC60Q8IWA6 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC16.71■□□□□ 0.27
CCDC60Q8IWA6 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
CCDC60Q8IWA6 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC60Q8IWA6 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC16.7■□□□□ 0.26
CCDC60Q8IWA6 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC60Q8IWA6 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC16.7■□□□□ 0.26
CCDC60Q8IWA6 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC60Q8IWA6 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC60Q8IWA6 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
CCDC60Q8IWA6 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC16.7■□□□□ 0.26
CCDC60Q8IWA6 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC60Q8IWA6 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC60Q8IWA6 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC16.7■□□□□ 0.26
CCDC60Q8IWA6 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC60Q8IWA6 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC60Q8IWA6 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC60Q8IWA6 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC60Q8IWA6 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC16.7■□□□□ 0.26
CCDC60Q8IWA6 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC16.7■□□□□ 0.26
CCDC60Q8IWA6 SRP14-201ENST00000267884 1077 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC60Q8IWA6 GTSF1-201ENST00000305879 804 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC60Q8IWA6 FZR1-201ENST00000313639 1215 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC60Q8IWA6 C3orf22-201ENST00000318225 1000 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC60Q8IWA6 CALCA-201ENST00000331587 843 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC60Q8IWA6 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC60Q8IWA6 NDUFAB1P1-201ENST00000404262 460 ntBASIC16.7■□□□□ 0.26
CCDC60Q8IWA6 RPL35A-205ENST00000448864 549 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC60Q8IWA6 AC004898.1-201ENST00000451057 766 ntBASIC16.7■□□□□ 0.26
CCDC60Q8IWA6 OARD1-212ENST00000482515 832 ntTSL 2 BASIC16.7■□□□□ 0.26
CCDC60Q8IWA6 CDC23-208ENST00000505120 455 ntTSL 3 BASIC16.7■□□□□ 0.26
CCDC60Q8IWA6 AC113192.2-201ENST00000525320 308 ntTSL 3 BASIC16.7■□□□□ 0.26
CCDC60Q8IWA6 PPP1R32-205ENST00000538185 1107 ntTSL 2 BASIC16.7■□□□□ 0.26
CCDC60Q8IWA6 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC16.7■□□□□ 0.26
CCDC60Q8IWA6 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC16.7■□□□□ 0.26
CCDC60Q8IWA6 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC16.7■□□□□ 0.26
CCDC60Q8IWA6 AP005329.1-201ENST00000578800 1035 ntTSL 2 BASIC16.7■□□□□ 0.26
CCDC60Q8IWA6 AC008537.4-201ENST00000595728 1103 ntTSL 5 BASIC16.7■□□□□ 0.26
CCDC60Q8IWA6 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC16.7■□□□□ 0.26
CCDC60Q8IWA6 AL136301.1-201ENST00000615830 422 ntBASIC16.7■□□□□ 0.26
CCDC60Q8IWA6 RBM8A-206ENST00000632555 751 ntAPPRIS P1 TSL 3 BASIC16.7■□□□□ 0.26
CCDC60Q8IWA6 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC60Q8IWA6 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC16.7■□□□□ 0.26
CCDC60Q8IWA6 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 43 ms