Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 PER3-208ENST00000613533 6318 ntAPPRIS ALT2 TSL 5 BASIC14.6□□□□□ -0.07
PPP4R4Q6NUP7 AC112229.3-201ENST00000603767 3202 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
PPP4R4Q6NUP7 AC013271.1-201ENST00000640669 3202 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
PPP4R4Q6NUP7 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC14.6□□□□□ -0.07
PPP4R4Q6NUP7 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
PPP4R4Q6NUP7 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
PPP4R4Q6NUP7 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
PPP4R4Q6NUP7 SNX20-202ENST00000330943 2904 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
PPP4R4Q6NUP7 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC14.6□□□□□ -0.07
PPP4R4Q6NUP7 FBXO3-203ENST00000526785 5798 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
PPP4R4Q6NUP7 APP-205ENST00000358918 2366 ntTSL 5 BASIC14.6□□□□□ -0.07
PPP4R4Q6NUP7 LOXL3-202ENST00000393937 2398 ntTSL 5 BASIC14.6□□□□□ -0.07
PPP4R4Q6NUP7 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC14.6□□□□□ -0.07
PPP4R4Q6NUP7 FLII-201ENST00000327031 4338 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
PPP4R4Q6NUP7 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
PPP4R4Q6NUP7 ATXN7L1-207ENST00000477775 2426 ntTSL 2 BASIC14.6□□□□□ -0.07
PPP4R4Q6NUP7 KIF19-202ENST00000389916 3643 ntAPPRIS P1 TSL 5 BASIC14.6□□□□□ -0.07
PPP4R4Q6NUP7 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
PPP4R4Q6NUP7 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
PPP4R4Q6NUP7 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC14.6□□□□□ -0.07
PPP4R4Q6NUP7 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
PPP4R4Q6NUP7 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
PPP4R4Q6NUP7 CENPM-205ENST00000404067 905 ntTSL 3 BASIC14.6□□□□□ -0.07
PPP4R4Q6NUP7 RPL5P21-201ENST00000404620 815 ntBASIC14.6□□□□□ -0.07
PPP4R4Q6NUP7 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC14.6□□□□□ -0.07
PPP4R4Q6NUP7 WDR53-203ENST00000429115 683 ntTSL 2 BASIC14.6□□□□□ -0.07
PPP4R4Q6NUP7 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC14.6□□□□□ -0.07
PPP4R4Q6NUP7 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC14.6□□□□□ -0.07
PPP4R4Q6NUP7 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
PPP4R4Q6NUP7 DUX4L27-201ENST00000554796 1261 ntBASIC14.6□□□□□ -0.07
PPP4R4Q6NUP7 MAX-210ENST00000555419 765 ntTSL 5 BASIC14.6□□□□□ -0.07
PPP4R4Q6NUP7 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC14.6□□□□□ -0.07
PPP4R4Q6NUP7 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC14.6□□□□□ -0.07
PPP4R4Q6NUP7 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC14.6□□□□□ -0.07
PPP4R4Q6NUP7 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC14.6□□□□□ -0.07
PPP4R4Q6NUP7 AL355385.1-201ENST00000606123 409 ntBASIC14.6□□□□□ -0.07
PPP4R4Q6NUP7 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC14.6□□□□□ -0.07
PPP4R4Q6NUP7 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
PPP4R4Q6NUP7 NEDD4L-238ENST00000635997 4402 ntTSL 5 BASIC14.6□□□□□ -0.07
PPP4R4Q6NUP7 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC14.6□□□□□ -0.07
PPP4R4Q6NUP7 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC14.6□□□□□ -0.07
PPP4R4Q6NUP7 FOXL1-201ENST00000320241 3655 ntAPPRIS P1 BASIC14.6□□□□□ -0.07
PPP4R4Q6NUP7 FEM1A-201ENST00000269856 9593 ntAPPRIS P1 BASIC14.6□□□□□ -0.07
PPP4R4Q6NUP7 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
PPP4R4Q6NUP7 RNF183-206ENST00000478815 2312 ntAPPRIS P1 BASIC14.6□□□□□ -0.07
PPP4R4Q6NUP7 FOXO1B-201ENST00000504678 1527 ntBASIC14.6□□□□□ -0.07
PPP4R4Q6NUP7 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
PPP4R4Q6NUP7 LRRFIP1-203ENST00000308482 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
PPP4R4Q6NUP7 CICP17-201ENST00000418553 2377 ntBASIC14.6□□□□□ -0.07
PPP4R4Q6NUP7 DPY19L2P2-201ENST00000312132 4078 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
PPP4R4Q6NUP7 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC14.6□□□□□ -0.07
PPP4R4Q6NUP7 FOXRED2-201ENST00000216187 3933 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
PPP4R4Q6NUP7 RSPO3-201ENST00000356698 2697 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
PPP4R4Q6NUP7 GABRA1-201ENST00000023897 2083 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
PPP4R4Q6NUP7 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC14.59□□□□□ -0.07
PPP4R4Q6NUP7 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
PPP4R4Q6NUP7 GCC1-201ENST00000321407 4149 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
PPP4R4Q6NUP7 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
PPP4R4Q6NUP7 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
PPP4R4Q6NUP7 PRELP-201ENST00000343110 5747 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
PPP4R4Q6NUP7 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
PPP4R4Q6NUP7 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC14.59□□□□□ -0.07
PPP4R4Q6NUP7 CDH16-209ENST00000570262 2604 ntTSL 5 BASIC14.59□□□□□ -0.07
PPP4R4Q6NUP7 KDM5C-208ENST00000452825 6096 ntAPPRIS ALT2 TSL 5 BASIC14.59□□□□□ -0.07
PPP4R4Q6NUP7 IFNAR2-202ENST00000342136 2899 ntAPPRIS P4 TSL 1 (best) BASIC14.59□□□□□ -0.07
PPP4R4Q6NUP7 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC14.59□□□□□ -0.07
PPP4R4Q6NUP7 KIAA1257-204ENST00000511438 2408 ntAPPRIS ALT2 TSL 2 BASIC14.59□□□□□ -0.07
PPP4R4Q6NUP7 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC14.59□□□□□ -0.07
PPP4R4Q6NUP7 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC14.59□□□□□ -0.07
PPP4R4Q6NUP7 TREML5P-201ENST00000421694 576 ntBASIC14.59□□□□□ -0.07
PPP4R4Q6NUP7 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC14.59□□□□□ -0.07
PPP4R4Q6NUP7 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC14.59□□□□□ -0.07
PPP4R4Q6NUP7 PPP6R2P1-201ENST00000450880 1275 ntBASIC14.59□□□□□ -0.07
PPP4R4Q6NUP7 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC14.59□□□□□ -0.07
PPP4R4Q6NUP7 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC14.59□□□□□ -0.07
PPP4R4Q6NUP7 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
PPP4R4Q6NUP7 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC14.59□□□□□ -0.07
PPP4R4Q6NUP7 KCNH6-202ENST00000456941 2928 ntTSL 5 BASIC14.59□□□□□ -0.07
PPP4R4Q6NUP7 SGK2-204ENST00000373100 2225 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
PPP4R4Q6NUP7 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
PPP4R4Q6NUP7 GRM1-203ENST00000361719 6754 ntAPPRIS P3 TSL 5 BASIC14.59□□□□□ -0.07
PPP4R4Q6NUP7 SOAT1-203ENST00000539888 6794 ntTSL 2 BASIC14.59□□□□□ -0.07
PPP4R4Q6NUP7 MOCS3-201ENST00000244051 5106 ntAPPRIS P1 BASIC14.59□□□□□ -0.07
PPP4R4Q6NUP7 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
PPP4R4Q6NUP7 EFR3B-202ENST00000401432 5162 ntTSL 2 BASIC14.59□□□□□ -0.07
PPP4R4Q6NUP7 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
PPP4R4Q6NUP7 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC14.59□□□□□ -0.07
PPP4R4Q6NUP7 PCDHGA6-202ENST00000610583 5650 ntAPPRIS P1 BASIC14.59□□□□□ -0.07
PPP4R4Q6NUP7 PHTF1-204ENST00000369604 3273 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
PPP4R4Q6NUP7 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
PPP4R4Q6NUP7 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
PPP4R4Q6NUP7 WDR77-201ENST00000235090 2576 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
PPP4R4Q6NUP7 CORO7-222ENST00000574025 2826 ntTSL 2 BASIC14.59□□□□□ -0.07
PPP4R4Q6NUP7 PDHX-201ENST00000227868 2389 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
PPP4R4Q6NUP7 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
PPP4R4Q6NUP7 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
PPP4R4Q6NUP7 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC14.59□□□□□ -0.07
PPP4R4Q6NUP7 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
PPP4R4Q6NUP7 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
PPP4R4Q6NUP7 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC14.59□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 91.3 ms