Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
KRT39Q6A163 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC16.33■□□□□ 0.2
KRT39Q6A163 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
KRT39Q6A163 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
KRT39Q6A163 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC16.33■□□□□ 0.2
KRT39Q6A163 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
KRT39Q6A163 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
KRT39Q6A163 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
KRT39Q6A163 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
KRT39Q6A163 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC16.33■□□□□ 0.2
KRT39Q6A163 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
KRT39Q6A163 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC16.32■□□□□ 0.2
KRT39Q6A163 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
KRT39Q6A163 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
KRT39Q6A163 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
KRT39Q6A163 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
KRT39Q6A163 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
KRT39Q6A163 MROH1-201ENST00000326134 5183 ntAPPRIS P3 TSL 5 BASIC16.32■□□□□ 0.2
KRT39Q6A163 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
KRT39Q6A163 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
KRT39Q6A163 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC16.32■□□□□ 0.2
KRT39Q6A163 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
KRT39Q6A163 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
KRT39Q6A163 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC16.32■□□□□ 0.2
KRT39Q6A163 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC16.32■□□□□ 0.2
KRT39Q6A163 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
KRT39Q6A163 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC16.32■□□□□ 0.2
KRT39Q6A163 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC16.32■□□□□ 0.2
KRT39Q6A163 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC16.32■□□□□ 0.2
KRT39Q6A163 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
KRT39Q6A163 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
KRT39Q6A163 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
KRT39Q6A163 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC16.32■□□□□ 0.2
KRT39Q6A163 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC16.32■□□□□ 0.2
KRT39Q6A163 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC16.32■□□□□ 0.2
KRT39Q6A163 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC16.32■□□□□ 0.2
KRT39Q6A163 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC16.32■□□□□ 0.2
KRT39Q6A163 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC16.32■□□□□ 0.2
KRT39Q6A163 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC16.32■□□□□ 0.2
KRT39Q6A163 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
KRT39Q6A163 MYO15B-237ENST00000642007 4893 ntBASIC16.32■□□□□ 0.2
KRT39Q6A163 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
KRT39Q6A163 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
KRT39Q6A163 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
KRT39Q6A163 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
KRT39Q6A163 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
KRT39Q6A163 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
KRT39Q6A163 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
KRT39Q6A163 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
KRT39Q6A163 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
KRT39Q6A163 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
KRT39Q6A163 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC16.31■□□□□ 0.2
KRT39Q6A163 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
KRT39Q6A163 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
KRT39Q6A163 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
KRT39Q6A163 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
KRT39Q6A163 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
KRT39Q6A163 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
KRT39Q6A163 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
KRT39Q6A163 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
KRT39Q6A163 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
KRT39Q6A163 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
KRT39Q6A163 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
KRT39Q6A163 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC16.31■□□□□ 0.2
KRT39Q6A163 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
KRT39Q6A163 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC16.31■□□□□ 0.2
KRT39Q6A163 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
KRT39Q6A163 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC16.31■□□□□ 0.2
KRT39Q6A163 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC16.31■□□□□ 0.2
KRT39Q6A163 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC16.31■□□□□ 0.2
KRT39Q6A163 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC16.31■□□□□ 0.2
KRT39Q6A163 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
KRT39Q6A163 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC16.31■□□□□ 0.2
KRT39Q6A163 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC16.31■□□□□ 0.2
KRT39Q6A163 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC16.31■□□□□ 0.2
KRT39Q6A163 AC015936.2-201ENST00000593177 259 ntBASIC16.31■□□□□ 0.2
KRT39Q6A163 AC145423.3-201ENST00000615987 467 ntBASIC16.31■□□□□ 0.2
KRT39Q6A163 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
KRT39Q6A163 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
KRT39Q6A163 MTHFR-210ENST00000641407 2387 ntBASIC16.31■□□□□ 0.2
KRT39Q6A163 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
KRT39Q6A163 CAMK1D-204ENST00000619168 8153 ntAPPRIS P4 TSL 1 (best) BASIC16.31■□□□□ 0.2
KRT39Q6A163 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC16.31■□□□□ 0.2
KRT39Q6A163 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
KRT39Q6A163 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC16.31■□□□□ 0.2
KRT39Q6A163 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC16.31■□□□□ 0.2
KRT39Q6A163 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
KRT39Q6A163 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC16.31■□□□□ 0.2
KRT39Q6A163 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
KRT39Q6A163 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
KRT39Q6A163 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
KRT39Q6A163 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC16.31■□□□□ 0.2
KRT39Q6A163 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC16.3■□□□□ 0.2
KRT39Q6A163 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
KRT39Q6A163 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC16.3■□□□□ 0.2
KRT39Q6A163 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
KRT39Q6A163 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
KRT39Q6A163 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
KRT39Q6A163 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
KRT39Q6A163 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 86.7 ms