Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
VPS53Q5VIR6 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC18.28■□□□□ 0.52
VPS53Q5VIR6 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
VPS53Q5VIR6 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
VPS53Q5VIR6 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
VPS53Q5VIR6 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
VPS53Q5VIR6 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
VPS53Q5VIR6 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
VPS53Q5VIR6 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
VPS53Q5VIR6 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
VPS53Q5VIR6 MGST3-203ENST00000367885 680 ntTSL 2 BASIC18.28■□□□□ 0.52
VPS53Q5VIR6 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC18.28■□□□□ 0.52
VPS53Q5VIR6 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
VPS53Q5VIR6 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC18.28■□□□□ 0.52
VPS53Q5VIR6 AC022137.2-201ENST00000503482 481 ntBASIC18.28■□□□□ 0.52
VPS53Q5VIR6 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC18.28■□□□□ 0.52
VPS53Q5VIR6 AC106760.1-201ENST00000508690 800 ntBASIC18.28■□□□□ 0.52
VPS53Q5VIR6 NEU3-203ENST00000529024 581 ntTSL 3 BASIC18.28■□□□□ 0.52
VPS53Q5VIR6 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
VPS53Q5VIR6 CR383656.12-201ENST00000549567 513 ntBASIC18.28■□□□□ 0.52
VPS53Q5VIR6 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
VPS53Q5VIR6 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC18.28■□□□□ 0.52
VPS53Q5VIR6 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
VPS53Q5VIR6 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
VPS53Q5VIR6 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
VPS53Q5VIR6 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC18.28■□□□□ 0.52
VPS53Q5VIR6 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
VPS53Q5VIR6 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC18.28■□□□□ 0.52
VPS53Q5VIR6 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC18.28■□□□□ 0.52
VPS53Q5VIR6 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
VPS53Q5VIR6 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
VPS53Q5VIR6 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
VPS53Q5VIR6 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
VPS53Q5VIR6 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC18.28■□□□□ 0.52
VPS53Q5VIR6 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
VPS53Q5VIR6 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
VPS53Q5VIR6 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
VPS53Q5VIR6 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
VPS53Q5VIR6 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
VPS53Q5VIR6 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
VPS53Q5VIR6 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.52
VPS53Q5VIR6 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC18.27■□□□□ 0.52
VPS53Q5VIR6 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC18.27■□□□□ 0.52
VPS53Q5VIR6 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
VPS53Q5VIR6 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC18.27■□□□□ 0.52
VPS53Q5VIR6 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
VPS53Q5VIR6 ITSN2-203ENST00000406921 4563 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
VPS53Q5VIR6 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
VPS53Q5VIR6 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC18.27■□□□□ 0.52
VPS53Q5VIR6 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC18.27■□□□□ 0.52
VPS53Q5VIR6 MAGI1-201ENST00000330909 7415 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
VPS53Q5VIR6 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
VPS53Q5VIR6 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
VPS53Q5VIR6 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
VPS53Q5VIR6 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
VPS53Q5VIR6 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
VPS53Q5VIR6 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
VPS53Q5VIR6 APOA1-205ENST00000375329 927 ntTSL 2 BASIC18.27■□□□□ 0.52
VPS53Q5VIR6 BRF1-202ENST00000379932 884 ntTSL 5 BASIC18.27■□□□□ 0.52
VPS53Q5VIR6 MXI1-205ENST00000393134 889 ntTSL 2 BASIC18.27■□□□□ 0.52
VPS53Q5VIR6 AL139094.1-201ENST00000405549 1188 ntBASIC18.27■□□□□ 0.52
VPS53Q5VIR6 AC007389.4-201ENST00000454674 793 ntBASIC18.27■□□□□ 0.52
VPS53Q5VIR6 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC18.27■□□□□ 0.52
VPS53Q5VIR6 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC18.27■□□□□ 0.52
VPS53Q5VIR6 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
VPS53Q5VIR6 KSR1-207ENST00000578981 748 ntTSL 4 BASIC18.27■□□□□ 0.52
VPS53Q5VIR6 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC18.27■□□□□ 0.52
VPS53Q5VIR6 AP005019.2-201ENST00000615104 511 ntBASIC18.27■□□□□ 0.52
VPS53Q5VIR6 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
VPS53Q5VIR6 SMARCA2-203ENST00000349721 5761 ntTSL 5 BASIC18.27■□□□□ 0.52
VPS53Q5VIR6 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC18.27■□□□□ 0.52
VPS53Q5VIR6 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
VPS53Q5VIR6 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC18.27■□□□□ 0.52
VPS53Q5VIR6 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
VPS53Q5VIR6 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
VPS53Q5VIR6 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
VPS53Q5VIR6 CA10-203ENST00000451037 3189 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
VPS53Q5VIR6 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
VPS53Q5VIR6 EFCAB2-202ENST00000366522 6167 ntTSL 2 BASIC18.27■□□□□ 0.51
VPS53Q5VIR6 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
VPS53Q5VIR6 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
VPS53Q5VIR6 AC239800.3-201ENST00000424684 5243 ntTSL 5 BASIC18.26■□□□□ 0.51
VPS53Q5VIR6 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
VPS53Q5VIR6 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC18.26■□□□□ 0.51
VPS53Q5VIR6 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC18.26■□□□□ 0.51
VPS53Q5VIR6 ADCY6-201ENST00000307885 6464 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
VPS53Q5VIR6 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC18.26■□□□□ 0.51
VPS53Q5VIR6 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
VPS53Q5VIR6 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
VPS53Q5VIR6 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
VPS53Q5VIR6 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
VPS53Q5VIR6 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
VPS53Q5VIR6 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
VPS53Q5VIR6 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
VPS53Q5VIR6 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC18.26■□□□□ 0.51
VPS53Q5VIR6 ACKR1-201ENST00000368121 1240 ntBASIC18.26■□□□□ 0.51
VPS53Q5VIR6 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
VPS53Q5VIR6 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC18.26■□□□□ 0.51
VPS53Q5VIR6 AC012441.1-201ENST00000446669 685 ntBASIC18.26■□□□□ 0.51
VPS53Q5VIR6 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC18.26■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 77.5 ms