Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC12.67□□□□□ -0.38
PDLIM3Q53GG5 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
PDLIM3Q53GG5 AC026748.1-201ENST00000624349 3251 ntBASIC12.67□□□□□ -0.38
PDLIM3Q53GG5 TRIM67-201ENST00000366653 3936 ntAPPRIS P2 TSL 1 (best) BASIC12.67□□□□□ -0.38
PDLIM3Q53GG5 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
PDLIM3Q53GG5 ERC1-219ENST00000546231 4390 ntTSL 5 BASIC12.67□□□□□ -0.38
PDLIM3Q53GG5 SOCS2-205ENST00000548537 3733 ntTSL 2 BASIC12.67□□□□□ -0.38
PDLIM3Q53GG5 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC12.67□□□□□ -0.38
PDLIM3Q53GG5 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
PDLIM3Q53GG5 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC12.67□□□□□ -0.38
PDLIM3Q53GG5 RPS6KC1-208ENST00000614059 4188 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
PDLIM3Q53GG5 ZBED1P1-201ENST00000502364 1930 ntBASIC12.67□□□□□ -0.38
PDLIM3Q53GG5 NCOR2-208ENST00000429285 8475 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
PDLIM3Q53GG5 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC12.67□□□□□ -0.38
PDLIM3Q53GG5 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
PDLIM3Q53GG5 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
PDLIM3Q53GG5 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC12.67□□□□□ -0.38
PDLIM3Q53GG5 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
PDLIM3Q53GG5 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
PDLIM3Q53GG5 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC12.67□□□□□ -0.38
PDLIM3Q53GG5 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC12.67□□□□□ -0.38
PDLIM3Q53GG5 RPL5P21-201ENST00000404620 815 ntBASIC12.67□□□□□ -0.38
PDLIM3Q53GG5 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
PDLIM3Q53GG5 AC119751.2-201ENST00000504529 210 ntBASIC12.67□□□□□ -0.38
PDLIM3Q53GG5 GSTZ1-219ENST00000557639 873 ntTSL 2 BASIC12.67□□□□□ -0.38
PDLIM3Q53GG5 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC12.67□□□□□ -0.38
PDLIM3Q53GG5 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC12.67□□□□□ -0.38
PDLIM3Q53GG5 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
PDLIM3Q53GG5 WDR17-205ENST00000508596 4294 ntAPPRIS ALT1 TSL 1 (best) BASIC12.67□□□□□ -0.38
PDLIM3Q53GG5 COCH-202ENST00000396618 2536 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
PDLIM3Q53GG5 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
PDLIM3Q53GG5 KCNG4-201ENST00000308251 5179 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
PDLIM3Q53GG5 AL136982.4-201ENST00000437689 1740 ntBASIC12.67□□□□□ -0.38
PDLIM3Q53GG5 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC12.67□□□□□ -0.38
PDLIM3Q53GG5 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC12.67□□□□□ -0.38
PDLIM3Q53GG5 C16orf52-202ENST00000542527 4360 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
PDLIM3Q53GG5 KCNT1-209ENST00000490355 3708 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
PDLIM3Q53GG5 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
PDLIM3Q53GG5 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
PDLIM3Q53GG5 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
PDLIM3Q53GG5 PCDHA5-201ENST00000529619 4157 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
PDLIM3Q53GG5 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
PDLIM3Q53GG5 GCC1-201ENST00000321407 4149 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
PDLIM3Q53GG5 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
PDLIM3Q53GG5 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC12.67□□□□□ -0.38
PDLIM3Q53GG5 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC12.67□□□□□ -0.38
PDLIM3Q53GG5 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC12.67□□□□□ -0.38
PDLIM3Q53GG5 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC12.67□□□□□ -0.38
PDLIM3Q53GG5 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
PDLIM3Q53GG5 FHOD3-201ENST00000257209 4967 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
PDLIM3Q53GG5 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC12.66□□□□□ -0.38
PDLIM3Q53GG5 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
PDLIM3Q53GG5 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC12.66□□□□□ -0.38
PDLIM3Q53GG5 PAG1-201ENST00000220597 10744 ntAPPRIS P1 TSL 2 BASIC12.66□□□□□ -0.38
PDLIM3Q53GG5 PARVB-201ENST00000338758 5429 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
PDLIM3Q53GG5 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC12.66□□□□□ -0.38
PDLIM3Q53GG5 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
PDLIM3Q53GG5 PATZ1-203ENST00000351933 3638 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
PDLIM3Q53GG5 CYP4F24P-201ENST00000586049 1580 ntBASIC12.66□□□□□ -0.38
PDLIM3Q53GG5 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
PDLIM3Q53GG5 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC12.66□□□□□ -0.38
PDLIM3Q53GG5 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
PDLIM3Q53GG5 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC12.66□□□□□ -0.38
PDLIM3Q53GG5 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
PDLIM3Q53GG5 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC12.66□□□□□ -0.38
PDLIM3Q53GG5 NUDT1-206ENST00000397049 714 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
PDLIM3Q53GG5 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC12.66□□□□□ -0.38
PDLIM3Q53GG5 PSMG3-203ENST00000404674 774 ntAPPRIS P1 TSL 2 BASIC12.66□□□□□ -0.38
PDLIM3Q53GG5 AC087499.6-201ENST00000411576 835 ntBASIC12.66□□□□□ -0.38
PDLIM3Q53GG5 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC12.66□□□□□ -0.38
PDLIM3Q53GG5 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC12.66□□□□□ -0.38
PDLIM3Q53GG5 AL139010.1-201ENST00000454878 894 ntBASIC12.66□□□□□ -0.38
PDLIM3Q53GG5 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC12.66□□□□□ -0.38
PDLIM3Q53GG5 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC12.66□□□□□ -0.38
PDLIM3Q53GG5 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC12.66□□□□□ -0.38
PDLIM3Q53GG5 STOM-203ENST00000538954 1257 ntTSL 5 BASIC12.66□□□□□ -0.38
PDLIM3Q53GG5 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC12.66□□□□□ -0.38
PDLIM3Q53GG5 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC12.66□□□□□ -0.38
PDLIM3Q53GG5 AC097359.3-201ENST00000603982 1210 ntBASIC12.66□□□□□ -0.38
PDLIM3Q53GG5 AC244093.1-201ENST00000610837 814 ntBASIC12.66□□□□□ -0.38
PDLIM3Q53GG5 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC12.66□□□□□ -0.38
PDLIM3Q53GG5 AL109936.8-201ENST00000641772 604 ntBASIC12.66□□□□□ -0.38
PDLIM3Q53GG5 PFAS-201ENST00000314666 5371 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
PDLIM3Q53GG5 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC12.66□□□□□ -0.38
PDLIM3Q53GG5 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC12.66□□□□□ -0.38
PDLIM3Q53GG5 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
PDLIM3Q53GG5 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC12.66□□□□□ -0.38
PDLIM3Q53GG5 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
PDLIM3Q53GG5 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
PDLIM3Q53GG5 GRAMD4P3-201ENST00000621665 1669 ntBASIC12.66□□□□□ -0.38
PDLIM3Q53GG5 AC005089.1-201ENST00000619486 2241 ntBASIC12.66□□□□□ -0.38
PDLIM3Q53GG5 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC12.66□□□□□ -0.38
PDLIM3Q53GG5 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
PDLIM3Q53GG5 PPP2R1A-201ENST00000322088 5380 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
PDLIM3Q53GG5 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC12.66□□□□□ -0.38
PDLIM3Q53GG5 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
PDLIM3Q53GG5 TMEM132C-201ENST00000435159 4947 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
PDLIM3Q53GG5 C1R-202ENST00000536053 2347 ntTSL 2 BASIC12.66□□□□□ -0.38
PDLIM3Q53GG5 SAMD4A-202ENST00000392067 6833 ntAPPRIS P1 TSL 2 BASIC12.66□□□□□ -0.38
PDLIM3Q53GG5 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms