Protein–RNA interactions for Protein: Q00526

CDK3, Cyclin-dependent kinase 3, humanhuman

Predictions only

Length 305 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDK3Q00526 SNHG12-210ENST00000483436 682 ntTSL 3 BASIC14.82□□□□□ -0.04
CDK3Q00526 AC020659.2-202ENST00000512295 513 ntTSL 2 BASIC14.82□□□□□ -0.04
CDK3Q00526 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC14.82□□□□□ -0.04
CDK3Q00526 PACS1-203ENST00000524815 628 ntTSL 4 BASIC14.82□□□□□ -0.04
CDK3Q00526 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC14.82□□□□□ -0.04
CDK3Q00526 AC123786.1-201ENST00000581626 661 ntTSL 3 BASIC14.82□□□□□ -0.04
CDK3Q00526 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC14.82□□□□□ -0.04
CDK3Q00526 AC091271.1-201ENST00000611877 1162 ntBASIC14.82□□□□□ -0.04
CDK3Q00526 MIR6869-201ENST00000619434 62 ntBASIC14.82□□□□□ -0.04
CDK3Q00526 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CDK3Q00526 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC14.82□□□□□ -0.04
CDK3Q00526 AL138725.1-201ENST00000407347 1314 ntBASIC14.82□□□□□ -0.04
CDK3Q00526 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC14.82□□□□□ -0.04
CDK3Q00526 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
CDK3Q00526 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC14.82□□□□□ -0.04
CDK3Q00526 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC14.82□□□□□ -0.04
CDK3Q00526 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CDK3Q00526 AC020910.5-201ENST00000623668 1865 ntBASIC14.82□□□□□ -0.04
CDK3Q00526 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
CDK3Q00526 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC14.82□□□□□ -0.04
CDK3Q00526 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC14.82□□□□□ -0.04
CDK3Q00526 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC14.82□□□□□ -0.04
CDK3Q00526 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
CDK3Q00526 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CDK3Q00526 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CDK3Q00526 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CDK3Q00526 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CDK3Q00526 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CDK3Q00526 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
CDK3Q00526 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
CDK3Q00526 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
CDK3Q00526 AGAP7P-201ENST00000582299 2062 ntBASIC14.81□□□□□ -0.04
CDK3Q00526 AGAP14-201ENST00000624701 2060 ntBASIC14.81□□□□□ -0.04
CDK3Q00526 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC14.81□□□□□ -0.04
CDK3Q00526 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC14.81□□□□□ -0.04
CDK3Q00526 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
CDK3Q00526 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CDK3Q00526 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC14.81□□□□□ -0.04
CDK3Q00526 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CDK3Q00526 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CDK3Q00526 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CDK3Q00526 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC14.81□□□□□ -0.04
CDK3Q00526 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
CDK3Q00526 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC14.81□□□□□ -0.04
CDK3Q00526 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC14.81□□□□□ -0.04
CDK3Q00526 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC14.81□□□□□ -0.04
CDK3Q00526 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
CDK3Q00526 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC14.81□□□□□ -0.04
CDK3Q00526 TISP43-201ENST00000409793 538 ntTSL 4 BASIC14.81□□□□□ -0.04
CDK3Q00526 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
CDK3Q00526 TLE1P1-201ENST00000422965 589 ntBASIC14.81□□□□□ -0.04
CDK3Q00526 AC007969.1-201ENST00000433675 447 ntBASIC14.81□□□□□ -0.04
CDK3Q00526 HIST2H2BB-201ENST00000449108 381 ntBASIC14.81□□□□□ -0.04
CDK3Q00526 LINC01248-201ENST00000458264 468 ntTSL 3 BASIC14.81□□□□□ -0.04
CDK3Q00526 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
CDK3Q00526 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
CDK3Q00526 AGER-214ENST00000538695 487 ntTSL 2 BASIC14.81□□□□□ -0.04
CDK3Q00526 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
CDK3Q00526 C19orf70-204ENST00000587950 655 ntTSL 2 BASIC14.81□□□□□ -0.04
CDK3Q00526 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC14.81□□□□□ -0.04
CDK3Q00526 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
CDK3Q00526 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC14.81□□□□□ -0.04
CDK3Q00526 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
CDK3Q00526 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CDK3Q00526 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CDK3Q00526 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
CDK3Q00526 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC14.81□□□□□ -0.04
CDK3Q00526 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
CDK3Q00526 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC14.81□□□□□ -0.04
CDK3Q00526 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CDK3Q00526 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CDK3Q00526 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC14.81□□□□□ -0.04
CDK3Q00526 AC003102.2-201ENST00000589195 1469 ntBASIC14.81□□□□□ -0.04
CDK3Q00526 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC14.81□□□□□ -0.04
CDK3Q00526 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CDK3Q00526 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
CDK3Q00526 LINC00554-201ENST00000564841 3011 ntBASIC14.81□□□□□ -0.04
CDK3Q00526 FAF1-202ENST00000396153 6817 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CDK3Q00526 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC14.81□□□□□ -0.04
CDK3Q00526 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
CDK3Q00526 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC14.81□□□□□ -0.04
CDK3Q00526 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
CDK3Q00526 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC14.81□□□□□ -0.04
CDK3Q00526 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CDK3Q00526 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
CDK3Q00526 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
CDK3Q00526 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
CDK3Q00526 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC14.8□□□□□ -0.04
CDK3Q00526 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
CDK3Q00526 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC14.8□□□□□ -0.04
CDK3Q00526 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CDK3Q00526 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CDK3Q00526 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CDK3Q00526 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CDK3Q00526 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
CDK3Q00526 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
CDK3Q00526 AC009093.2-202ENST00000620513 2079 ntBASIC14.8□□□□□ -0.04
CDK3Q00526 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CDK3Q00526 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC14.8□□□□□ -0.04
CDK3Q00526 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 88.5 ms