Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
PTPN9P43378 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
PTPN9P43378 AC003102.2-201ENST00000589195 1469 ntBASIC15.69■□□□□ 0.1
PTPN9P43378 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC15.69■□□□□ 0.1
PTPN9P43378 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
PTPN9P43378 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
PTPN9P43378 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC15.69■□□□□ 0.1
PTPN9P43378 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
PTPN9P43378 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
PTPN9P43378 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
PTPN9P43378 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
PTPN9P43378 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
PTPN9P43378 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC15.69■□□□□ 0.1
PTPN9P43378 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
PTPN9P43378 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
PTPN9P43378 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
PTPN9P43378 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
PTPN9P43378 AMT-204ENST00000427987 1646 ntTSL 5 BASIC15.68■□□□□ 0.1
PTPN9P43378 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC15.68■□□□□ 0.1
PTPN9P43378 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
PTPN9P43378 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC15.68■□□□□ 0.1
PTPN9P43378 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC15.68■□□□□ 0.1
PTPN9P43378 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC15.68■□□□□ 0.1
PTPN9P43378 FLJ16779-201ENST00000612722 7638 ntBASIC15.68■□□□□ 0.1
PTPN9P43378 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
PTPN9P43378 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
PTPN9P43378 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC15.68■□□□□ 0.1
PTPN9P43378 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC15.68■□□□□ 0.1
PTPN9P43378 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC15.68■□□□□ 0.1
PTPN9P43378 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
PTPN9P43378 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
PTPN9P43378 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
PTPN9P43378 EDF1-203ENST00000371649 790 ntTSL 2 BASIC15.68■□□□□ 0.1
PTPN9P43378 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
PTPN9P43378 MESTP3-201ENST00000503460 968 ntBASIC15.68■□□□□ 0.1
PTPN9P43378 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
PTPN9P43378 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC15.68■□□□□ 0.1
PTPN9P43378 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
PTPN9P43378 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC15.68■□□□□ 0.1
PTPN9P43378 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC15.68■□□□□ 0.1
PTPN9P43378 AL022328.1-201ENST00000610050 478 ntBASIC15.68■□□□□ 0.1
PTPN9P43378 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC15.68■□□□□ 0.1
PTPN9P43378 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
PTPN9P43378 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
PTPN9P43378 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC15.68■□□□□ 0.1
PTPN9P43378 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC15.68■□□□□ 0.1
PTPN9P43378 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
PTPN9P43378 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC15.68■□□□□ 0.1
PTPN9P43378 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC15.68■□□□□ 0.1
PTPN9P43378 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
PTPN9P43378 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
PTPN9P43378 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
PTPN9P43378 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
PTPN9P43378 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
PTPN9P43378 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
PTPN9P43378 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
PTPN9P43378 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC15.68■□□□□ 0.1
PTPN9P43378 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC15.68■□□□□ 0.1
PTPN9P43378 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
PTPN9P43378 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
PTPN9P43378 API5-203ENST00000455725 2257 ntTSL 2 BASIC15.68■□□□□ 0.1
PTPN9P43378 AL138725.1-201ENST00000407347 1314 ntBASIC15.68■□□□□ 0.1
PTPN9P43378 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC15.68■□□□□ 0.1
PTPN9P43378 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
PTPN9P43378 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC15.67■□□□□ 0.1
PTPN9P43378 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
PTPN9P43378 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
PTPN9P43378 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC15.67■□□□□ 0.1
PTPN9P43378 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
PTPN9P43378 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC15.67■□□□□ 0.1
PTPN9P43378 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
PTPN9P43378 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PTPN9P43378 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PTPN9P43378 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC15.67■□□□□ 0.1
PTPN9P43378 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC15.67■□□□□ 0.1
PTPN9P43378 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC15.67■□□□□ 0.1
PTPN9P43378 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PTPN9P43378 BCRP2-202ENST00000447763 634 ntBASIC15.67■□□□□ 0.1
PTPN9P43378 BCRP6-201ENST00000510112 632 ntBASIC15.67■□□□□ 0.1
PTPN9P43378 BCRP7-201ENST00000511549 544 ntBASIC15.67■□□□□ 0.1
PTPN9P43378 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC15.67■□□□□ 0.1
PTPN9P43378 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
PTPN9P43378 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC15.67■□□□□ 0.1
PTPN9P43378 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC15.67■□□□□ 0.1
PTPN9P43378 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC15.67■□□□□ 0.1
PTPN9P43378 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
PTPN9P43378 AC012645.4-201ENST00000610691 1061 ntBASIC15.67■□□□□ 0.1
PTPN9P43378 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC15.67■□□□□ 0.1
PTPN9P43378 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
PTPN9P43378 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC15.67■□□□□ 0.1
PTPN9P43378 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PTPN9P43378 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PTPN9P43378 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC15.67■□□□□ 0.1
PTPN9P43378 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
PTPN9P43378 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
PTPN9P43378 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PTPN9P43378 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
PTPN9P43378 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PTPN9P43378 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PTPN9P43378 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC15.67■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms