Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 PIGT-208ENST00000545755 1158 ntTSL 5 BASIC19.29■□□□□ 0.68
COL18A1P39060 HERC2P11-201ENST00000562845 725 ntBASIC19.29■□□□□ 0.68
COL18A1P39060 AC100756.2-201ENST00000569537 736 ntBASIC19.29■□□□□ 0.68
COL18A1P39060 AC007250.1-201ENST00000608934 338 ntBASIC19.29■□□□□ 0.68
COL18A1P39060 SLC12A5-219ENST00000628272 401 ntTSL 3 BASIC19.29■□□□□ 0.68
COL18A1P39060 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
COL18A1P39060 LINC00470-210ENST00000584090 1334 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
COL18A1P39060 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL18A1P39060 SLC38A6-201ENST00000267488 1688 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL18A1P39060 PRAL-201ENST00000624952 3286 ntBASIC19.29■□□□□ 0.68
COL18A1P39060 PGAP2-227ENST00000496834 1530 ntTSL 2 BASIC19.29■□□□□ 0.68
COL18A1P39060 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL18A1P39060 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL18A1P39060 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC19.29■□□□□ 0.68
COL18A1P39060 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
COL18A1P39060 PAX7-202ENST00000400661 1700 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
COL18A1P39060 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
COL18A1P39060 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
COL18A1P39060 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
COL18A1P39060 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC19.29■□□□□ 0.68
COL18A1P39060 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL18A1P39060 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC19.29■□□□□ 0.68
COL18A1P39060 SRPX-205ENST00000538295 1780 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
COL18A1P39060 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC19.29■□□□□ 0.68
COL18A1P39060 CRYGC-201ENST00000282141 629 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL18A1P39060 AC132803.1-201ENST00000504204 493 ntTSL 2 BASIC19.29■□□□□ 0.68
COL18A1P39060 AC093826.1-201ENST00000508655 993 ntBASIC19.29■□□□□ 0.68
COL18A1P39060 AC079174.1-201ENST00000552486 312 ntTSL 3 BASIC19.29■□□□□ 0.68
COL18A1P39060 ZSCAN10-205ENST00000572548 618 ntTSL 3 BASIC19.29■□□□□ 0.68
COL18A1P39060 SNHG15-205ENST00000580458 710 ntTSL 2 BASIC19.29■□□□□ 0.68
COL18A1P39060 RN7SL596P-201ENST00000582123 288 ntBASIC19.29■□□□□ 0.68
COL18A1P39060 HKR1-225ENST00000592168 566 ntTSL 4 BASIC19.29■□□□□ 0.68
COL18A1P39060 SIGLEC22P-201ENST00000599104 714 ntBASIC19.29■□□□□ 0.68
COL18A1P39060 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC19.29■□□□□ 0.68
COL18A1P39060 KCTD6-202ENST00000404589 1533 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
COL18A1P39060 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL18A1P39060 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL18A1P39060 LTF-202ENST00000417439 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL18A1P39060 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL18A1P39060 MAGEA2-203ENST00000611557 2024 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
COL18A1P39060 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC19.28■□□□□ 0.68
COL18A1P39060 LIMS1-201ENST00000332345 1235 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL18A1P39060 COX20P1-201ENST00000366529 357 ntBASIC19.28■□□□□ 0.68
COL18A1P39060 S100A3-202ENST00000368713 856 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL18A1P39060 PPM1N-205ENST00000401705 771 ntTSL 3 BASIC19.28■□□□□ 0.68
COL18A1P39060 GCSHP3-201ENST00000431120 391 ntBASIC19.28■□□□□ 0.68
COL18A1P39060 AC233724.6-201ENST00000503184 1088 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
COL18A1P39060 AP003398.1-201ENST00000531124 318 ntBASIC19.28■□□□□ 0.68
COL18A1P39060 AC020659.1-202ENST00000564432 531 ntTSL 5 BASIC19.28■□□□□ 0.68
COL18A1P39060 SRRM2-205ENST00000570971 1132 ntTSL 2 BASIC19.28■□□□□ 0.68
COL18A1P39060 RPL13A-213ENST00000621674 1098 ntTSL 5 BASIC19.28■□□□□ 0.68
COL18A1P39060 ERCC1-208ENST00000589165 1453 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
COL18A1P39060 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC19.28■□□□□ 0.68
COL18A1P39060 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC19.28■□□□□ 0.68
COL18A1P39060 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC19.28■□□□□ 0.68
COL18A1P39060 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC19.28■□□□□ 0.68
COL18A1P39060 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL18A1P39060 TRMT10B-207ENST00000537911 2108 ntTSL 2 BASIC19.28■□□□□ 0.68
COL18A1P39060 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
COL18A1P39060 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
COL18A1P39060 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL18A1P39060 CELP-203ENST00000624767 2414 ntTSL 5 BASIC19.28■□□□□ 0.68
COL18A1P39060 GNAO1-205ENST00000563661 1351 ntTSL 2 BASIC19.28■□□□□ 0.68
COL18A1P39060 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC19.28■□□□□ 0.68
COL18A1P39060 FDFT1-223ENST00000615631 2462 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
COL18A1P39060 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
COL18A1P39060 Z84468.1-201ENST00000626321 1408 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
COL18A1P39060 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
COL18A1P39060 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
COL18A1P39060 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC19.27■□□□□ 0.68
COL18A1P39060 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
COL18A1P39060 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
COL18A1P39060 GON7-201ENST00000306954 1154 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
COL18A1P39060 MAPK13-202ENST00000373759 1036 ntTSL 5 BASIC19.27■□□□□ 0.68
COL18A1P39060 AQP7P5-201ENST00000428759 1049 ntBASIC19.27■□□□□ 0.68
COL18A1P39060 AQP7P4-201ENST00000447083 1042 ntBASIC19.27■□□□□ 0.68
COL18A1P39060 AQP7P2-201ENST00000453967 1041 ntBASIC19.27■□□□□ 0.68
COL18A1P39060 AL355803.1-201ENST00000455524 188 ntTSL 2 BASIC19.27■□□□□ 0.68
COL18A1P39060 AC009119.2-201ENST00000561562 723 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
COL18A1P39060 INCA1-203ENST00000575780 1221 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
COL18A1P39060 RN7SL357P-201ENST00000581065 298 ntBASIC19.27■□□□□ 0.68
COL18A1P39060 AL133467.4-201ENST00000602953 725 ntBASIC19.27■□□□□ 0.68
COL18A1P39060 AL136040.2-201ENST00000618431 1130 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
COL18A1P39060 ANXA8L1-206ENST00000619162 1109 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
COL18A1P39060 AC011471.3-201ENST00000623576 402 ntBASIC19.27■□□□□ 0.68
COL18A1P39060 AQP7P3-201ENST00000624547 1041 ntBASIC19.27■□□□□ 0.68
COL18A1P39060 AC002472.4-201ENST00000641915 272 ntBASIC19.27■□□□□ 0.68
COL18A1P39060 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
COL18A1P39060 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC19.27■□□□□ 0.68
COL18A1P39060 EBP-205ENST00000495186 1775 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
COL18A1P39060 AGGF1P1-201ENST00000509500 2073 ntBASIC19.27■□□□□ 0.68
COL18A1P39060 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
COL18A1P39060 AL513315.1-201ENST00000640756 1370 ntTSL 5 BASIC19.27■□□□□ 0.68
COL18A1P39060 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
COL18A1P39060 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
COL18A1P39060 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.68
COL18A1P39060 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
COL18A1P39060 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
COL18A1P39060 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.67
COL18A1P39060 SLC35B2-206ENST00000615337 2014 ntTSL 4 BASIC19.27■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 47.2 ms