Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC14.86□□□□□ -0.03
SHMT2P34897 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC14.86□□□□□ -0.03
SHMT2P34897 AC106886.1-201ENST00000568660 600 ntBASIC14.86□□□□□ -0.03
SHMT2P34897 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC14.86□□□□□ -0.03
SHMT2P34897 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
SHMT2P34897 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC14.86□□□□□ -0.03
SHMT2P34897 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC14.86□□□□□ -0.03
SHMT2P34897 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
SHMT2P34897 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SHMT2P34897 AC134312.5-201ENST00000568031 1313 ntBASIC14.86□□□□□ -0.03
SHMT2P34897 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC14.86□□□□□ -0.03
SHMT2P34897 LRRN1-201ENST00000319331 3823 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SHMT2P34897 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
SHMT2P34897 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
SHMT2P34897 GPAT2-202ENST00000434632 3061 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
SHMT2P34897 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
SHMT2P34897 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
SHMT2P34897 KRT8P44-201ENST00000441609 1350 ntBASIC14.85□□□□□ -0.03
SHMT2P34897 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
SHMT2P34897 AC148477.4-201ENST00000613430 1793 ntBASIC14.85□□□□□ -0.03
SHMT2P34897 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
SHMT2P34897 SOX7-201ENST00000304501 3216 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SHMT2P34897 TMEM38A-201ENST00000187762 2649 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SHMT2P34897 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SHMT2P34897 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SHMT2P34897 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC14.85□□□□□ -0.03
SHMT2P34897 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SHMT2P34897 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SHMT2P34897 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
SHMT2P34897 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
SHMT2P34897 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SHMT2P34897 RSPRY1-202ENST00000537866 3586 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
SHMT2P34897 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SHMT2P34897 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC14.85□□□□□ -0.03
SHMT2P34897 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SHMT2P34897 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
SHMT2P34897 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SHMT2P34897 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
SHMT2P34897 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SHMT2P34897 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
SHMT2P34897 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
SHMT2P34897 AC005229.1-201ENST00000392885 409 ntBASIC14.85□□□□□ -0.03
SHMT2P34897 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SHMT2P34897 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC14.85□□□□□ -0.03
SHMT2P34897 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
SHMT2P34897 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC14.85□□□□□ -0.03
SHMT2P34897 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC14.85□□□□□ -0.03
SHMT2P34897 USP32P1-208ENST00000506594 1164 ntBASIC14.85□□□□□ -0.03
SHMT2P34897 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
SHMT2P34897 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC14.85□□□□□ -0.03
SHMT2P34897 SLC25A47P1-201ENST00000531577 414 ntBASIC14.85□□□□□ -0.03
SHMT2P34897 APOC4-201ENST00000591600 348 ntTSL 3 BASIC14.85□□□□□ -0.03
SHMT2P34897 BTNL10-201ENST00000595971 695 ntBASIC14.85□□□□□ -0.03
SHMT2P34897 AL022328.1-201ENST00000610050 478 ntBASIC14.85□□□□□ -0.03
SHMT2P34897 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC14.85□□□□□ -0.03
SHMT2P34897 PRSS30P-206ENST00000641773 873 ntBASIC14.85□□□□□ -0.03
SHMT2P34897 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
SHMT2P34897 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
SHMT2P34897 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SHMT2P34897 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC14.85□□□□□ -0.03
SHMT2P34897 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SHMT2P34897 CNNM2-203ENST00000433628 3857 ntAPPRIS ALT1 TSL 2 BASIC14.85□□□□□ -0.03
SHMT2P34897 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
SHMT2P34897 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SHMT2P34897 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC14.84□□□□□ -0.03
SHMT2P34897 AL158070.2-201ENST00000623713 1621 ntBASIC14.84□□□□□ -0.03
SHMT2P34897 NRG2-209ENST00000541337 3723 ntTSL 5 BASIC14.84□□□□□ -0.03
SHMT2P34897 PWWP2A-201ENST00000307063 3346 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SHMT2P34897 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC14.84□□□□□ -0.03
SHMT2P34897 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SHMT2P34897 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SHMT2P34897 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SHMT2P34897 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
SHMT2P34897 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SHMT2P34897 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
SHMT2P34897 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
SHMT2P34897 ST3GAL3-208ENST00000361392 2243 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SHMT2P34897 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
SHMT2P34897 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SHMT2P34897 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
SHMT2P34897 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
SHMT2P34897 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC14.84□□□□□ -0.03
SHMT2P34897 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SHMT2P34897 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC14.84□□□□□ -0.03
SHMT2P34897 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC14.84□□□□□ -0.03
SHMT2P34897 RPL28-203ENST00000428193 573 ntTSL 2 BASIC14.84□□□□□ -0.03
SHMT2P34897 RPL28-204ENST00000431533 590 ntTSL 2 BASIC14.84□□□□□ -0.03
SHMT2P34897 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC14.84□□□□□ -0.03
SHMT2P34897 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
SHMT2P34897 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC14.84□□□□□ -0.03
SHMT2P34897 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
SHMT2P34897 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC14.84□□□□□ -0.03
SHMT2P34897 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC14.84□□□□□ -0.03
SHMT2P34897 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC14.84□□□□□ -0.03
SHMT2P34897 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC14.84□□□□□ -0.03
SHMT2P34897 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC14.84□□□□□ -0.03
SHMT2P34897 RPL28-207ENST00000558815 616 ntTSL 2 BASIC14.84□□□□□ -0.03
SHMT2P34897 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC14.84□□□□□ -0.03
SHMT2P34897 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC14.84□□□□□ -0.03
SHMT2P34897 AL162274.1-201ENST00000617191 1098 ntBASIC14.84□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms