Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 AC140113.1-201ENST00000603467 169 ntBASIC17.61■□□□□ 0.41
COL4A5P29400 CSAG3-203ENST00000638835 793 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL4A5P29400 CSAG2-204ENST00000640702 793 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL4A5P29400 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL4A5P29400 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC17.61■□□□□ 0.41
COL4A5P29400 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL4A5P29400 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL4A5P29400 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL4A5P29400 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC17.6■□□□□ 0.41
COL4A5P29400 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL4A5P29400 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC17.6■□□□□ 0.41
COL4A5P29400 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC17.6■□□□□ 0.41
COL4A5P29400 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL4A5P29400 CRYL1-201ENST00000298248 1485 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL4A5P29400 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC17.6■□□□□ 0.41
COL4A5P29400 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL4A5P29400 SSBP1-201ENST00000265304 687 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL4A5P29400 CRYGC-201ENST00000282141 629 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL4A5P29400 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL4A5P29400 PYY2-201ENST00000315776 282 ntBASIC17.6■□□□□ 0.41
COL4A5P29400 OR4S1-201ENST00000319988 930 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
COL4A5P29400 SPATA8-201ENST00000328504 1083 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL4A5P29400 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL4A5P29400 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL4A5P29400 KRTAP1-3-201ENST00000344363 972 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
COL4A5P29400 CHTF8-202ENST00000398235 1073 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
COL4A5P29400 PPM1N-205ENST00000401705 771 ntTSL 3 BASIC17.6■□□□□ 0.41
COL4A5P29400 Metazoa_SRP.9-201ENST00000415635 283 ntBASIC17.6■□□□□ 0.41
COL4A5P29400 CTHRC1-202ENST00000415886 571 ntTSL 2 BASIC17.6■□□□□ 0.41
COL4A5P29400 FAM92A-202ENST00000423990 914 ntTSL 5 BASIC17.6■□□□□ 0.41
COL4A5P29400 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC17.6■□□□□ 0.41
COL4A5P29400 ASGR2-203ENST00000446679 879 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL4A5P29400 C17orf58-202ENST00000449250 1082 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL4A5P29400 AC105219.2-201ENST00000527908 299 ntTSL 4 BASIC17.6■□□□□ 0.41
COL4A5P29400 NACA-221ENST00000552540 1074 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL4A5P29400 SNHG21-204ENST00000559366 674 ntTSL 2 BASIC17.6■□□□□ 0.41
COL4A5P29400 AC135782.2-201ENST00000562040 472 ntTSL 3 BASIC17.6■□□□□ 0.41
COL4A5P29400 SLC35B2-206ENST00000615337 2014 ntTSL 4 BASIC17.6■□□□□ 0.41
COL4A5P29400 AC020658.6-201ENST00000623564 1870 ntBASIC17.6■□□□□ 0.41
COL4A5P29400 AC009093.10-201ENST00000641956 1442 ntBASIC17.6■□□□□ 0.41
COL4A5P29400 LINC00963-203ENST00000423918 1654 ntTSL 2 BASIC17.6■□□□□ 0.41
COL4A5P29400 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC17.6■□□□□ 0.41
COL4A5P29400 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
COL4A5P29400 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC17.6■□□□□ 0.41
COL4A5P29400 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL4A5P29400 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
COL4A5P29400 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC17.6■□□□□ 0.41
COL4A5P29400 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
COL4A5P29400 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC17.59■□□□□ 0.41
COL4A5P29400 COQ3-201ENST00000254759 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
COL4A5P29400 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
COL4A5P29400 AL672207.1-201ENST00000328462 1570 ntBASIC17.59■□□□□ 0.41
COL4A5P29400 PPT1-205ENST00000449045 1957 ntTSL 2 BASIC17.59■□□□□ 0.41
COL4A5P29400 BRD7P5-201ENST00000299197 1822 ntBASIC17.59■□□□□ 0.41
COL4A5P29400 CRYBB3-201ENST00000215855 867 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
COL4A5P29400 POLR2L-201ENST00000322028 892 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
COL4A5P29400 Metazoa_SRP.6-201ENST00000366384 298 ntBASIC17.59■□□□□ 0.41
COL4A5P29400 IGF2-201ENST00000381389 1023 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
COL4A5P29400 GSTT2B-202ENST00000404172 819 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
COL4A5P29400 CLNS1A-211ENST00000532069 898 ntTSL 3 BASIC17.59■□□□□ 0.41
COL4A5P29400 RN7SL665P-201ENST00000578793 300 ntBASIC17.59■□□□□ 0.41
COL4A5P29400 AC055811.3-201ENST00000584952 686 ntBASIC17.59■□□□□ 0.41
COL4A5P29400 AC020934.2-201ENST00000592400 456 ntTSL 3 BASIC17.59■□□□□ 0.41
COL4A5P29400 KCTD6-202ENST00000404589 1533 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
COL4A5P29400 KHSRPP1-201ENST00000427983 1768 ntBASIC17.59■□□□□ 0.41
COL4A5P29400 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
COL4A5P29400 FTX-216ENST00000638985 1367 ntTSL 5 BASIC17.59■□□□□ 0.41
COL4A5P29400 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC17.59■□□□□ 0.41
COL4A5P29400 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC17.59■□□□□ 0.41
COL4A5P29400 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC17.59■□□□□ 0.41
COL4A5P29400 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
COL4A5P29400 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
COL4A5P29400 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC17.59■□□□□ 0.41
COL4A5P29400 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
COL4A5P29400 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC17.59■□□□□ 0.41
COL4A5P29400 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
COL4A5P29400 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
COL4A5P29400 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
COL4A5P29400 C3orf52-202ENST00000431717 2054 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
COL4A5P29400 AC006504.5-208ENST00000588784 2401 ntBASIC17.59■□□□□ 0.41
COL4A5P29400 ACTG1P17-202ENST00000560958 1662 ntTSL 2 BASIC17.59■□□□□ 0.41
COL4A5P29400 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC17.58■□□□□ 0.41
COL4A5P29400 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
COL4A5P29400 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
COL4A5P29400 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
COL4A5P29400 MAPK13-202ENST00000373759 1036 ntTSL 5 BASIC17.58■□□□□ 0.41
COL4A5P29400 IGLC1-201ENST00000390321 460 ntAPPRIS P1 BASIC17.58■□□□□ 0.41
COL4A5P29400 AC112721.1-201ENST00000409162 588 ntTSL 3 BASIC17.58■□□□□ 0.41
COL4A5P29400 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC17.58■□□□□ 0.41
COL4A5P29400 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC17.58■□□□□ 0.41
COL4A5P29400 AL691482.3-201ENST00000504773 987 ntTSL 2 BASIC17.58■□□□□ 0.41
COL4A5P29400 AC106047.2-201ENST00000511723 743 ntBASIC17.58■□□□□ 0.41
COL4A5P29400 TRMT10B-207ENST00000537911 2108 ntTSL 2 BASIC17.58■□□□□ 0.41
COL4A5P29400 AC007250.1-201ENST00000608934 338 ntBASIC17.58■□□□□ 0.41
COL4A5P29400 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.41
COL4A5P29400 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.41
COL4A5P29400 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.41
COL4A5P29400 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC17.58■□□□□ 0.41
COL4A5P29400 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
COL4A5P29400 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 55.8 ms