Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SMARCA1P28370 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC17.24■□□□□ 0.35
SMARCA1P28370 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SMARCA1P28370 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SMARCA1P28370 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
SMARCA1P28370 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SMARCA1P28370 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SMARCA1P28370 VCX3B-201ENST00000381029 756 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
SMARCA1P28370 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC17.24■□□□□ 0.35
SMARCA1P28370 OLR1-203ENST00000432556 950 ntTSL 2 BASIC17.24■□□□□ 0.35
SMARCA1P28370 IQCF3-203ENST00000444293 450 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SMARCA1P28370 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SMARCA1P28370 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC17.24■□□□□ 0.35
SMARCA1P28370 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC17.24■□□□□ 0.35
SMARCA1P28370 RN7SL560P-201ENST00000577943 264 ntBASIC17.24■□□□□ 0.35
SMARCA1P28370 MIR4683-201ENST00000579659 81 ntBASIC17.24■□□□□ 0.35
SMARCA1P28370 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC17.24■□□□□ 0.35
SMARCA1P28370 AL354740.1-203ENST00000593917 424 ntTSL 3 BASIC17.24■□□□□ 0.35
SMARCA1P28370 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC17.24■□□□□ 0.35
SMARCA1P28370 API5-203ENST00000455725 2257 ntTSL 2 BASIC17.24■□□□□ 0.35
SMARCA1P28370 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SMARCA1P28370 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC17.24■□□□□ 0.35
SMARCA1P28370 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SMARCA1P28370 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SMARCA1P28370 CICP23-201ENST00000605013 2741 ntBASIC17.24■□□□□ 0.35
SMARCA1P28370 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SMARCA1P28370 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SMARCA1P28370 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC17.24■□□□□ 0.35
SMARCA1P28370 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SMARCA1P28370 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SMARCA1P28370 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SMARCA1P28370 MRPL37P1-201ENST00000592451 1337 ntBASIC17.23■□□□□ 0.35
SMARCA1P28370 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SMARCA1P28370 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SMARCA1P28370 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC17.23■□□□□ 0.35
SMARCA1P28370 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
SMARCA1P28370 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
SMARCA1P28370 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SMARCA1P28370 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SMARCA1P28370 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SMARCA1P28370 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SMARCA1P28370 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SMARCA1P28370 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC17.23■□□□□ 0.35
SMARCA1P28370 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SMARCA1P28370 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
SMARCA1P28370 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
SMARCA1P28370 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SMARCA1P28370 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
SMARCA1P28370 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC17.23■□□□□ 0.35
SMARCA1P28370 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC17.23■□□□□ 0.35
SMARCA1P28370 KLK4-202ENST00000431178 481 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SMARCA1P28370 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC17.23■□□□□ 0.35
SMARCA1P28370 ACR-203ENST00000529621 708 ntTSL 5 BASIC17.23■□□□□ 0.35
SMARCA1P28370 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC17.23■□□□□ 0.35
SMARCA1P28370 AC010491.1-202ENST00000567048 528 ntTSL 2 BASIC17.23■□□□□ 0.35
SMARCA1P28370 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC17.23■□□□□ 0.35
SMARCA1P28370 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC17.23■□□□□ 0.35
SMARCA1P28370 AP001002.3-201ENST00000623482 206 ntBASIC17.23■□□□□ 0.35
SMARCA1P28370 AL033527.4-201ENST00000641026 673 ntBASIC17.23■□□□□ 0.35
SMARCA1P28370 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SMARCA1P28370 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SMARCA1P28370 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
SMARCA1P28370 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SMARCA1P28370 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
SMARCA1P28370 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SMARCA1P28370 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC17.23■□□□□ 0.35
SMARCA1P28370 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC17.23■□□□□ 0.35
SMARCA1P28370 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
SMARCA1P28370 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SMARCA1P28370 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SMARCA1P28370 AC144831.1-201ENST00000573312 2656 ntBASIC17.23■□□□□ 0.35
SMARCA1P28370 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
SMARCA1P28370 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC17.23■□□□□ 0.35
SMARCA1P28370 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
SMARCA1P28370 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SMARCA1P28370 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC17.22■□□□□ 0.35
SMARCA1P28370 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SMARCA1P28370 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SMARCA1P28370 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC17.22■□□□□ 0.35
SMARCA1P28370 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC17.22■□□□□ 0.35
SMARCA1P28370 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SMARCA1P28370 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC17.22■□□□□ 0.35
SMARCA1P28370 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SMARCA1P28370 KLK1-201ENST00000301420 866 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SMARCA1P28370 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
SMARCA1P28370 APOC3-202ENST00000375345 604 ntTSL 5 BASIC17.22■□□□□ 0.35
SMARCA1P28370 ALG1L2-201ENST00000425059 969 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
SMARCA1P28370 GOLGA2P4-201ENST00000441462 777 ntBASIC17.22■□□□□ 0.35
SMARCA1P28370 PUDPP3-201ENST00000445368 636 ntBASIC17.22■□□□□ 0.35
SMARCA1P28370 HIST2H2BB-201ENST00000449108 381 ntBASIC17.22■□□□□ 0.35
SMARCA1P28370 AC100850.1-201ENST00000506768 649 ntBASIC17.22■□□□□ 0.35
SMARCA1P28370 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC17.22■□□□□ 0.35
SMARCA1P28370 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC17.22■□□□□ 0.35
SMARCA1P28370 AP003392.4-202ENST00000526453 1359 ntTSL 2 BASIC17.22■□□□□ 0.35
SMARCA1P28370 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
SMARCA1P28370 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
SMARCA1P28370 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SMARCA1P28370 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SMARCA1P28370 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SMARCA1P28370 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 70.3 ms