Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
USF1P22415 CSRNP2-201ENST00000228515 4471 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
USF1P22415 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
USF1P22415 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC12.88□□□□□ -0.35
USF1P22415 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
USF1P22415 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
USF1P22415 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
USF1P22415 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
USF1P22415 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC12.88□□□□□ -0.35
USF1P22415 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC12.88□□□□□ -0.35
USF1P22415 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
USF1P22415 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC12.88□□□□□ -0.35
USF1P22415 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
USF1P22415 BTNL8-205ENST00000505126 1294 ntTSL 2 BASIC12.88□□□□□ -0.35
USF1P22415 GAPDHP40-201ENST00000505218 1006 ntBASIC12.88□□□□□ -0.35
USF1P22415 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
USF1P22415 RNA5SP486-201ENST00000515961 83 ntBASIC12.88□□□□□ -0.35
USF1P22415 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC12.88□□□□□ -0.35
USF1P22415 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC12.88□□□□□ -0.35
USF1P22415 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC12.88□□□□□ -0.35
USF1P22415 AP003096.1-203ENST00000564469 563 ntTSL 3 BASIC12.88□□□□□ -0.35
USF1P22415 AP005329.1-201ENST00000578800 1035 ntTSL 2 BASIC12.88□□□□□ -0.35
USF1P22415 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC12.88□□□□□ -0.35
USF1P22415 AL139099.5-201ENST00000635274 300 ntBASIC12.88□□□□□ -0.35
USF1P22415 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC12.88□□□□□ -0.35
USF1P22415 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC12.88□□□□□ -0.35
USF1P22415 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
USF1P22415 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC12.88□□□□□ -0.35
USF1P22415 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC12.88□□□□□ -0.35
USF1P22415 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC12.88□□□□□ -0.35
USF1P22415 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
USF1P22415 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC12.88□□□□□ -0.35
USF1P22415 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
USF1P22415 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC12.88□□□□□ -0.35
USF1P22415 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
USF1P22415 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
USF1P22415 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
USF1P22415 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
USF1P22415 PHAX-201ENST00000297540 4288 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
USF1P22415 RLF-201ENST00000372771 6246 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
USF1P22415 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC12.88□□□□□ -0.35
USF1P22415 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
USF1P22415 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC12.88□□□□□ -0.35
USF1P22415 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
USF1P22415 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
USF1P22415 SNPH-203ENST00000614659 5354 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
USF1P22415 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC12.88□□□□□ -0.35
USF1P22415 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC12.88□□□□□ -0.35
USF1P22415 TMBIM7P-203ENST00000641617 1718 ntBASIC12.88□□□□□ -0.35
USF1P22415 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
USF1P22415 FOS-202ENST00000535987 1402 ntTSL 2 BASIC12.88□□□□□ -0.35
USF1P22415 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC12.88□□□□□ -0.35
USF1P22415 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC12.87□□□□□ -0.35
USF1P22415 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
USF1P22415 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC12.87□□□□□ -0.35
USF1P22415 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
USF1P22415 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
USF1P22415 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
USF1P22415 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC12.87□□□□□ -0.35
USF1P22415 AC126335.2-201ENST00000623362 4637 ntBASIC12.87□□□□□ -0.35
USF1P22415 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC12.87□□□□□ -0.35
USF1P22415 MEGF11-204ENST00000422354 5914 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
USF1P22415 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
USF1P22415 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC12.87□□□□□ -0.35
USF1P22415 C3orf22-201ENST00000318225 1000 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
USF1P22415 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC12.87□□□□□ -0.35
USF1P22415 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC12.87□□□□□ -0.35
USF1P22415 TCEAL1-203ENST00000372626 721 ntAPPRIS P1 TSL 2 BASIC12.87□□□□□ -0.35
USF1P22415 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC12.87□□□□□ -0.35
USF1P22415 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC12.87□□□□□ -0.35
USF1P22415 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC12.87□□□□□ -0.35
USF1P22415 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC12.87□□□□□ -0.35
USF1P22415 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC12.87□□□□□ -0.35
USF1P22415 GOLGA2P4-201ENST00000441462 777 ntBASIC12.87□□□□□ -0.35
USF1P22415 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
USF1P22415 PFN2-215ENST00000497148 743 ntTSL 4 BASIC12.87□□□□□ -0.35
USF1P22415 SELENOW-201ENST00000509570 881 ntTSL 5 BASIC12.87□□□□□ -0.35
USF1P22415 AP002748.3-205ENST00000525142 567 ntTSL 3 BASIC12.87□□□□□ -0.35
USF1P22415 AP002748.3-203ENST00000533502 581 ntTSL 3 BASIC12.87□□□□□ -0.35
USF1P22415 IGHV3OR16-16-201ENST00000563644 343 ntBASIC12.87□□□□□ -0.35
USF1P22415 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC12.87□□□□□ -0.35
USF1P22415 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
USF1P22415 FDPS-221ENST00000612683 1198 ntAPPRIS ALT1 TSL 5 BASIC12.87□□□□□ -0.35
USF1P22415 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC12.87□□□□□ -0.35
USF1P22415 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC12.87□□□□□ -0.35
USF1P22415 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC12.87□□□□□ -0.35
USF1P22415 ABBA01031663.1-201ENST00000635630 790 ntBASIC12.87□□□□□ -0.35
USF1P22415 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC12.87□□□□□ -0.35
USF1P22415 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC12.87□□□□□ -0.35
USF1P22415 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC12.87□□□□□ -0.35
USF1P22415 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC12.87□□□□□ -0.35
USF1P22415 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
USF1P22415 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
USF1P22415 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
USF1P22415 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
USF1P22415 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC12.87□□□□□ -0.35
USF1P22415 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC12.87□□□□□ -0.35
USF1P22415 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
USF1P22415 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
USF1P22415 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms