Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 ALMS1P1-201ENST00000428767 921 ntBASIC15.2■□□□□ 0.02
COL6A3P12111 RLN3-201ENST00000431365 580 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
COL6A3P12111 DUX4L50-201ENST00000455245 715 ntBASIC15.2■□□□□ 0.02
COL6A3P12111 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC15.2■□□□□ 0.02
COL6A3P12111 ATP6V1D-206ENST00000554236 888 ntTSL 5 BASIC15.2■□□□□ 0.02
COL6A3P12111 AC079779.4-201ENST00000619113 548 ntTSL 5 BASIC15.2■□□□□ 0.02
COL6A3P12111 LINC00244-201ENST00000625073 613 ntBASIC15.2■□□□□ 0.02
COL6A3P12111 AL807742.1-201ENST00000636678 1160 ntTSL 5 BASIC15.2■□□□□ 0.02
COL6A3P12111 AC002511.3-201ENST00000638098 420 ntBASIC15.2■□□□□ 0.02
COL6A3P12111 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
COL6A3P12111 AC006450.3-201ENST00000453529 2146 ntTSL 2 BASIC15.19■□□□□ 0.02
COL6A3P12111 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC15.19■□□□□ 0.02
COL6A3P12111 AL591122.2-201ENST00000624125 1853 ntBASIC15.19■□□□□ 0.02
COL6A3P12111 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC15.19■□□□□ 0.02
COL6A3P12111 G6PD-201ENST00000369620 1799 ntTSL 5 BASIC15.19■□□□□ 0.02
COL6A3P12111 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
COL6A3P12111 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC15.19■□□□□ 0.02
COL6A3P12111 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC15.19■□□□□ 0.02
COL6A3P12111 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
COL6A3P12111 GZMH-201ENST00000216338 909 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
COL6A3P12111 PITHD1-202ENST00000374524 1292 ntTSL 3 BASIC15.19■□□□□ 0.02
COL6A3P12111 MIR193A-201ENST00000384882 88 ntBASIC15.19■□□□□ 0.02
COL6A3P12111 APOBEC3B-204ENST00000407298 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
COL6A3P12111 AL137244.1-201ENST00000422931 865 ntBASIC15.19■□□□□ 0.02
COL6A3P12111 NSD2-209ENST00000436793 835 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
COL6A3P12111 AL121845.1-201ENST00000447343 464 ntTSL 2 BASIC15.19■□□□□ 0.02
COL6A3P12111 LINC01500-204ENST00000556815 752 ntTSL 3 BASIC15.19■□□□□ 0.02
COL6A3P12111 MIR663AHG-218ENST00000598448 804 ntTSL 5 BASIC15.19■□□□□ 0.02
COL6A3P12111 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC15.19■□□□□ 0.02
COL6A3P12111 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
COL6A3P12111 APTX-211ENST00000463596 1345 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
COL6A3P12111 ZNF691-201ENST00000372502 1910 ntAPPRIS ALT2 TSL 2 BASIC15.19■□□□□ 0.02
COL6A3P12111 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
COL6A3P12111 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC15.19■□□□□ 0.02
COL6A3P12111 ASGR1-209ENST00000619926 1384 ntTSL 5 BASIC15.19■□□□□ 0.02
COL6A3P12111 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
COL6A3P12111 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC15.19■□□□□ 0.02
COL6A3P12111 NRADDP-201ENST00000437305 691 ntBASIC15.19■□□□□ 0.02
COL6A3P12111 TTTY18-201ENST00000438677 221 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
COL6A3P12111 AL031587.2-201ENST00000445483 414 ntTSL 5 BASIC15.19■□□□□ 0.02
COL6A3P12111 HNRNPA1P72-201ENST00000529511 967 ntBASIC15.19■□□□□ 0.02
COL6A3P12111 AC003686.1-201ENST00000550956 1034 ntBASIC15.19■□□□□ 0.02
COL6A3P12111 AL133453.1-201ENST00000554055 581 ntTSL 3 BASIC15.19■□□□□ 0.02
COL6A3P12111 AC105133.1-201ENST00000559749 742 ntTSL 3 BASIC15.19■□□□□ 0.02
COL6A3P12111 AC010531.8-201ENST00000623341 685 ntBASIC15.19■□□□□ 0.02
COL6A3P12111 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
COL6A3P12111 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
COL6A3P12111 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC15.19■□□□□ 0.02
COL6A3P12111 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC15.19■□□□□ 0.02
COL6A3P12111 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
COL6A3P12111 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC15.19■□□□□ 0.02
COL6A3P12111 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC15.19■□□□□ 0.02
COL6A3P12111 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC15.18■□□□□ 0.02
COL6A3P12111 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
COL6A3P12111 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
COL6A3P12111 ZNRF4-201ENST00000222033 1426 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
COL6A3P12111 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC15.18■□□□□ 0.02
COL6A3P12111 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
COL6A3P12111 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
COL6A3P12111 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
COL6A3P12111 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
COL6A3P12111 SKA1-202ENST00000398452 979 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
COL6A3P12111 AL355376.1-201ENST00000456082 517 ntTSL 3 BASIC15.18■□□□□ 0.02
COL6A3P12111 FAM3D-AS1-201ENST00000464125 821 ntTSL 3 BASIC15.18■□□□□ 0.02
COL6A3P12111 ALG1L7P-201ENST00000502317 768 ntBASIC15.18■□□□□ 0.02
COL6A3P12111 KRT8P2-201ENST00000556193 944 ntBASIC15.18■□□□□ 0.02
COL6A3P12111 SCAMP5-216ENST00000568081 710 ntTSL 2 BASIC15.18■□□□□ 0.02
COL6A3P12111 TTC28-AS1_3.1-201ENST00000615579 181 ntBASIC15.18■□□□□ 0.02
COL6A3P12111 LINC00969-294ENST00000627609 992 ntTSL 5 BASIC15.18■□□□□ 0.02
COL6A3P12111 AL590556.2-202ENST00000636906 844 ntBASIC15.18■□□□□ 0.02
COL6A3P12111 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
COL6A3P12111 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
COL6A3P12111 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
COL6A3P12111 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC15.18■□□□□ 0.02
COL6A3P12111 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC15.18■□□□□ 0.02
COL6A3P12111 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
COL6A3P12111 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
COL6A3P12111 LINC00528-201ENST00000600723 2160 ntBASIC15.18■□□□□ 0.02
COL6A3P12111 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC15.18■□□□□ 0.02
COL6A3P12111 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
COL6A3P12111 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC15.18■□□□□ 0.02
COL6A3P12111 CD44-203ENST00000278386 484 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
COL6A3P12111 MRPL48-203ENST00000398483 1058 ntTSL 3 BASIC15.18■□□□□ 0.02
COL6A3P12111 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
COL6A3P12111 SHMT1P1-201ENST00000419974 1312 ntBASIC15.18■□□□□ 0.02
COL6A3P12111 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
COL6A3P12111 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
COL6A3P12111 COX14-201ENST00000317943 708 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
COL6A3P12111 AC022080.1-201ENST00000366255 781 ntBASIC15.18■□□□□ 0.02
COL6A3P12111 PDE4DIP-202ENST00000369347 1137 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
COL6A3P12111 AL359092.2-201ENST00000423330 585 ntBASIC15.18■□□□□ 0.02
COL6A3P12111 MUTYH-231ENST00000488731 740 ntTSL 5 BASIC15.18■□□□□ 0.02
COL6A3P12111 AC116025.1-201ENST00000575404 415 ntTSL 3 BASIC15.18■□□□□ 0.02
COL6A3P12111 NPIPB11-202ENST00000614927 1216 ntTSL 5 BASIC15.18■□□□□ 0.02
COL6A3P12111 CFAP36-204ENST00000406691 1575 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
COL6A3P12111 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
COL6A3P12111 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC15.17■□□□□ 0.02
COL6A3P12111 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC15.17■□□□□ 0.02
COL6A3P12111 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
COL6A3P12111 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 51.1 ms