Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 LINC01500-204ENST00000556815 752 ntTSL 3 BASIC20.64■□□□□ 0.89
NPHP4O75161 APOC1-209ENST00000592885 562 ntTSL 3 BASIC20.64■□□□□ 0.89
NPHP4O75161 Metazoa_SRP.127-201ENST00000614914 302 ntBASIC20.64■□□□□ 0.89
NPHP4O75161 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
NPHP4O75161 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC20.64■□□□□ 0.89
NPHP4O75161 WAC-202ENST00000347934 2839 ntTSL 5 BASIC20.64■□□□□ 0.89
NPHP4O75161 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
NPHP4O75161 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC20.64■□□□□ 0.89
NPHP4O75161 MRPL55-205ENST00000366731 1423 ntTSL 2 BASIC20.64■□□□□ 0.89
NPHP4O75161 AC009093.10-201ENST00000641956 1442 ntBASIC20.64■□□□□ 0.89
NPHP4O75161 DHRS7-209ENST00000557185 1322 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
NPHP4O75161 UQCC2-204ENST00000607484 1314 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
NPHP4O75161 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
NPHP4O75161 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
NPHP4O75161 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
NPHP4O75161 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
NPHP4O75161 ACTG1P17-202ENST00000560958 1662 ntTSL 2 BASIC20.64■□□□□ 0.89
NPHP4O75161 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
NPHP4O75161 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC20.64■□□□□ 0.89
NPHP4O75161 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
NPHP4O75161 ZNF691-206ENST00000372508 1577 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
NPHP4O75161 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC20.64■□□□□ 0.89
NPHP4O75161 RNF167-201ENST00000262482 1915 ntAPPRIS P3 TSL 2 BASIC20.64■□□□□ 0.89
NPHP4O75161 F10-203ENST00000409306 1450 ntTSL 3 BASIC20.63■□□□□ 0.89
NPHP4O75161 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
NPHP4O75161 WIPI1-201ENST00000262139 1832 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
NPHP4O75161 FUCA1P1-201ENST00000374476 1351 ntBASIC20.63■□□□□ 0.89
NPHP4O75161 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC20.63■□□□□ 0.89
NPHP4O75161 PLA2G2A-202ENST00000400520 974 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
NPHP4O75161 TPRKB-203ENST00000409716 816 ntTSL 5 BASIC20.63■□□□□ 0.89
NPHP4O75161 AC018814.1-201ENST00000418972 357 ntTSL 3 BASIC20.63■□□□□ 0.89
NPHP4O75161 AC006372.2-201ENST00000433660 292 ntTSL 3 BASIC20.63■□□□□ 0.89
NPHP4O75161 AL391415.1-201ENST00000439844 400 ntTSL 3 BASIC20.63■□□□□ 0.89
NPHP4O75161 MRPL43-211ENST00000477279 903 ntTSL 2 BASIC20.63■□□□□ 0.89
NPHP4O75161 EVX1-AS-203ENST00000519218 554 ntTSL 4 BASIC20.63■□□□□ 0.89
NPHP4O75161 ACSM5-206ENST00000575584 1130 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
NPHP4O75161 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
NPHP4O75161 AC237221.1-201ENST00000561575 1881 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
NPHP4O75161 CTSV-201ENST00000259470 1546 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
NPHP4O75161 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC20.63■□□□□ 0.89
NPHP4O75161 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
NPHP4O75161 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
NPHP4O75161 CNTNAP2-225ENST00000639247 2064 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
NPHP4O75161 PAIP2-201ENST00000265192 1459 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
NPHP4O75161 ATAT1-206ENST00000376485 1476 ntAPPRIS ALT1 TSL 5 BASIC20.63■□□□□ 0.89
NPHP4O75161 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
NPHP4O75161 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
NPHP4O75161 VEGFA-201ENST00000230480 993 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
NPHP4O75161 RPL10-202ENST00000369817 1284 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
NPHP4O75161 AIF1L-205ENST00000372301 671 ntTSL 2 BASIC20.62■□□□□ 0.89
NPHP4O75161 LCMT1-202ENST00000380966 989 ntTSL 2 BASIC20.62■□□□□ 0.89
NPHP4O75161 CCDC12-202ENST00000425441 1097 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
NPHP4O75161 SCARNA12-201ENST00000459155 270 ntBASIC20.62■□□□□ 0.89
NPHP4O75161 LZTS1-AS1-201ENST00000523103 892 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
NPHP4O75161 AC016266.1-201ENST00000557558 729 ntTSL 3 BASIC20.62■□□□□ 0.89
NPHP4O75161 AC009065.6-201ENST00000568795 456 ntTSL 2 BASIC20.62■□□□□ 0.89
NPHP4O75161 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
NPHP4O75161 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
NPHP4O75161 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
NPHP4O75161 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
NPHP4O75161 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
NPHP4O75161 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC20.62■□□□□ 0.89
NPHP4O75161 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
NPHP4O75161 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
NPHP4O75161 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
NPHP4O75161 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
NPHP4O75161 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
NPHP4O75161 LINC00963-203ENST00000423918 1654 ntTSL 2 BASIC20.62■□□□□ 0.89
NPHP4O75161 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC20.62■□□□□ 0.89
NPHP4O75161 LEMD1-205ENST00000367154 786 ntTSL 2 BASIC20.61■□□□□ 0.89
NPHP4O75161 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
NPHP4O75161 AL928742.1-201ENST00000497397 548 ntTSL 4 BASIC20.61■□□□□ 0.89
NPHP4O75161 AC095040.1-201ENST00000513286 675 ntBASIC20.61■□□□□ 0.89
NPHP4O75161 CASP3-205ENST00000517513 964 ntTSL 5 BASIC20.61■□□□□ 0.89
NPHP4O75161 AL590235.1-201ENST00000564650 861 ntBASIC20.61■□□□□ 0.89
NPHP4O75161 PGPEP1-203ENST00000595066 762 ntTSL 2 BASIC20.61■□□□□ 0.89
NPHP4O75161 AC006547.3-201ENST00000600090 583 ntTSL 3 BASIC20.61■□□□□ 0.89
NPHP4O75161 AC011462.4-201ENST00000616866 449 ntBASIC20.61■□□□□ 0.89
NPHP4O75161 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC20.61■□□□□ 0.89
NPHP4O75161 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC20.61■□□□□ 0.89
NPHP4O75161 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
NPHP4O75161 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
NPHP4O75161 NOP14-AS1-201ENST00000503709 1616 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
NPHP4O75161 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC20.61■□□□□ 0.89
NPHP4O75161 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC20.61■□□□□ 0.89
NPHP4O75161 FRMD6-AS1-201ENST00000617151 2229 ntBASIC20.61■□□□□ 0.89
NPHP4O75161 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC20.61■□□□□ 0.89
NPHP4O75161 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
NPHP4O75161 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
NPHP4O75161 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC20.61■□□□□ 0.89
NPHP4O75161 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
NPHP4O75161 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
NPHP4O75161 PORCN-204ENST00000361988 1672 ntAPPRIS ALT1 TSL 5 BASIC20.61■□□□□ 0.89
NPHP4O75161 MS4A15-201ENST00000337911 1536 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
NPHP4O75161 MPI-203ENST00000535694 1523 ntTSL 2 BASIC20.61■□□□□ 0.89
NPHP4O75161 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
NPHP4O75161 BCCIP-203ENST00000368759 1433 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
NPHP4O75161 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
NPHP4O75161 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
NPHP4O75161 AP002856.2-201ENST00000416553 584 ntTSL 3 BASIC20.61■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 56.3 ms