Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
NPHP1O15259 CHAT-212ENST00000640822 1412 ntTSL 5 BASIC19.06■□□□□ 0.64
NPHP1O15259 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
NPHP1O15259 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
NPHP1O15259 LTBP2-201ENST00000261978 8567 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
NPHP1O15259 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
NPHP1O15259 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC19.06■□□□□ 0.64
NPHP1O15259 BMP4-206ENST00000559087 1708 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
NPHP1O15259 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC19.05■□□□□ 0.64
NPHP1O15259 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
NPHP1O15259 GSDMA-203ENST00000635792 1546 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
NPHP1O15259 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC19.05■□□□□ 0.64
NPHP1O15259 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
NPHP1O15259 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC19.05■□□□□ 0.64
NPHP1O15259 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC19.05■□□□□ 0.64
NPHP1O15259 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC19.05■□□□□ 0.64
NPHP1O15259 EXT1-201ENST00000378204 8270 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
NPHP1O15259 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
NPHP1O15259 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC19.05■□□□□ 0.64
NPHP1O15259 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
NPHP1O15259 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
NPHP1O15259 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC19.05■□□□□ 0.64
NPHP1O15259 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
NPHP1O15259 B9D1-202ENST00000268841 755 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
NPHP1O15259 SYCE2-201ENST00000293695 1231 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
NPHP1O15259 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
NPHP1O15259 AC091046.1-201ENST00000331871 207 ntBASIC19.05■□□□□ 0.64
NPHP1O15259 DUSP13-202ENST00000372700 781 ntTSL 3 BASIC19.05■□□□□ 0.64
NPHP1O15259 FAM177A1-202ENST00000382406 858 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
NPHP1O15259 CD8B-204ENST00000393759 1096 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
NPHP1O15259 OSM-202ENST00000403389 1000 ntAPPRIS ALT2 TSL 3 BASIC19.05■□□□□ 0.64
NPHP1O15259 AL136309.1-201ENST00000403917 691 ntBASIC19.05■□□□□ 0.64
NPHP1O15259 PSMG3-203ENST00000404674 774 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
NPHP1O15259 GSTK1-202ENST00000409500 888 ntTSL 2 BASIC19.05■□□□□ 0.64
NPHP1O15259 AL450469.2-201ENST00000427132 499 ntTSL 3 BASIC19.05■□□□□ 0.64
NPHP1O15259 MSRA-203ENST00000441698 788 ntTSL 2 BASIC19.05■□□□□ 0.64
NPHP1O15259 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC19.05■□□□□ 0.64
NPHP1O15259 AC106738.2-201ENST00000559802 557 ntTSL 4 BASIC19.05■□□□□ 0.64
NPHP1O15259 RN7SL774P-201ENST00000577467 290 ntBASIC19.05■□□□□ 0.64
NPHP1O15259 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
NPHP1O15259 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
NPHP1O15259 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC19.05■□□□□ 0.64
NPHP1O15259 AXIN2-201ENST00000307078 4259 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
NPHP1O15259 METTL6-201ENST00000383789 1413 ntTSL 2 BASIC19.05■□□□□ 0.64
NPHP1O15259 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC19.05■□□□□ 0.64
NPHP1O15259 ACTR2-205ENST00000542850 1429 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
NPHP1O15259 ACTN2-206ENST00000542672 4906 ntAPPRIS ALT1 TSL 1 (best) BASIC19.05■□□□□ 0.64
NPHP1O15259 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
NPHP1O15259 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
NPHP1O15259 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
NPHP1O15259 TUBA3D-201ENST00000321253 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
NPHP1O15259 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
NPHP1O15259 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC19.05■□□□□ 0.64
NPHP1O15259 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
NPHP1O15259 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
NPHP1O15259 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
NPHP1O15259 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC19.04■□□□□ 0.64
NPHP1O15259 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC19.04■□□□□ 0.64
NPHP1O15259 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
NPHP1O15259 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC19.04■□□□□ 0.64
NPHP1O15259 TUBBP5-203ENST00000508529 1334 ntBASIC19.04■□□□□ 0.64
NPHP1O15259 SPTLC2-201ENST00000216484 8170 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
NPHP1O15259 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
NPHP1O15259 FRMD6-AS1-201ENST00000617151 2229 ntBASIC19.04■□□□□ 0.64
NPHP1O15259 KIF26B-202ENST00000407071 7287 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
NPHP1O15259 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
NPHP1O15259 MAX-201ENST00000246163 897 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
NPHP1O15259 SRP14-201ENST00000267884 1077 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
NPHP1O15259 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
NPHP1O15259 TPRKB-202ENST00000318190 819 ntTSL 5 BASIC19.04■□□□□ 0.64
NPHP1O15259 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
NPHP1O15259 CALCA-201ENST00000331587 843 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
NPHP1O15259 ERCC1-203ENST00000340192 949 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
NPHP1O15259 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
NPHP1O15259 MBTD1-201ENST00000376381 1420 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
NPHP1O15259 LINC01118-202ENST00000409912 1023 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
NPHP1O15259 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC19.04■□□□□ 0.64
NPHP1O15259 RPS2P36-201ENST00000456516 831 ntBASIC19.04■□□□□ 0.64
NPHP1O15259 PGRMC2-206ENST00000512483 1144 ntTSL 5 BASIC19.04■□□□□ 0.64
NPHP1O15259 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
NPHP1O15259 AC013355.1-201ENST00000562625 723 ntBASIC19.04■□□□□ 0.64
NPHP1O15259 TMEM208-207ENST00000563953 887 ntTSL 2 BASIC19.04■□□□□ 0.64
NPHP1O15259 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC19.04■□□□□ 0.64
NPHP1O15259 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
NPHP1O15259 AC008763.2-203ENST00000595866 762 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
NPHP1O15259 SIRT2-219ENST00000613542 1170 ntTSL 5 BASIC19.04■□□□□ 0.64
NPHP1O15259 AL021997.3-201ENST00000621053 557 ntAPPRIS P1 TSL 4 BASIC19.04■□□□□ 0.64
NPHP1O15259 GPRASP1-205ENST00000537097 5980 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
NPHP1O15259 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
NPHP1O15259 NDFIP2-201ENST00000218652 4625 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
NPHP1O15259 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
NPHP1O15259 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC19.04■□□□□ 0.64
NPHP1O15259 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
NPHP1O15259 AC127383.1-201ENST00000444697 1800 ntBASIC19.04■□□□□ 0.64
NPHP1O15259 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC19.04■□□□□ 0.64
NPHP1O15259 AC092850.2-201ENST00000623821 2697 ntBASIC19.04■□□□□ 0.64
NPHP1O15259 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
NPHP1O15259 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
NPHP1O15259 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC19.04■□□□□ 0.64
NPHP1O15259 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 52.3 ms