Protein–RNA interactions for Protein: O00203

AP3B1, AP-3 complex subunit beta-1, humanhuman

Predictions only

Length 1,094 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP3B1O00203 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC15.33■□□□□ 0.04
AP3B1O00203 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
AP3B1O00203 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC15.33■□□□□ 0.04
AP3B1O00203 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
AP3B1O00203 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
AP3B1O00203 SMARCA4-214ENST00000589677 5181 ntAPPRIS ALT1 TSL 5 BASIC15.33■□□□□ 0.04
AP3B1O00203 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC15.33■□□□□ 0.04
AP3B1O00203 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
AP3B1O00203 KCTD3-201ENST00000259154 3931 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
AP3B1O00203 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC15.33■□□□□ 0.04
AP3B1O00203 AC018529.2-202ENST00000611482 3087 ntBASIC15.33■□□□□ 0.04
AP3B1O00203 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC15.33■□□□□ 0.04
AP3B1O00203 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC15.33■□□□□ 0.04
AP3B1O00203 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
AP3B1O00203 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
AP3B1O00203 PPM1A-203ENST00000395076 8184 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
AP3B1O00203 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC15.33■□□□□ 0.04
AP3B1O00203 APC2-201ENST00000233607 10151 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
AP3B1O00203 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
AP3B1O00203 KIF3C-201ENST00000264712 5344 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
AP3B1O00203 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
AP3B1O00203 JARID2-202ENST00000397311 5595 ntAPPRIS ALT2 TSL 2 BASIC15.33■□□□□ 0.04
AP3B1O00203 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC15.33■□□□□ 0.04
AP3B1O00203 AMT-232ENST00000636199 1546 ntTSL 5 BASIC15.33■□□□□ 0.04
AP3B1O00203 PRICKLE1-201ENST00000345127 5902 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
AP3B1O00203 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC15.32■□□□□ 0.04
AP3B1O00203 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC15.32■□□□□ 0.04
AP3B1O00203 UHRF1BP1L-201ENST00000279907 5168 ntAPPRIS P4 TSL 1 (best) BASIC15.32■□□□□ 0.04
AP3B1O00203 AC007191.1-201ENST00000623179 2995 ntBASIC15.32■□□□□ 0.04
AP3B1O00203 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC15.32■□□□□ 0.04
AP3B1O00203 MICAL1-201ENST00000358577 3142 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
AP3B1O00203 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
AP3B1O00203 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC15.32■□□□□ 0.04
AP3B1O00203 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC15.32■□□□□ 0.04
AP3B1O00203 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
AP3B1O00203 METTL26-204ENST00000397665 558 ntTSL 2 BASIC15.32■□□□□ 0.04
AP3B1O00203 C1QBPP1-201ENST00000400117 770 ntBASIC15.32■□□□□ 0.04
AP3B1O00203 AC087499.6-201ENST00000411576 835 ntBASIC15.32■□□□□ 0.04
AP3B1O00203 SOCS2P1-201ENST00000417727 557 ntBASIC15.32■□□□□ 0.04
AP3B1O00203 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
AP3B1O00203 TPT1P11-201ENST00000458482 498 ntBASIC15.32■□□□□ 0.04
AP3B1O00203 INGX-202ENST00000489074 768 ntBASIC15.32■□□□□ 0.04
AP3B1O00203 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
AP3B1O00203 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC15.32■□□□□ 0.04
AP3B1O00203 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC15.32■□□□□ 0.04
AP3B1O00203 GPALPP1-207ENST00000611650 899 ntBASIC15.32■□□□□ 0.04
AP3B1O00203 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC15.32■□□□□ 0.04
AP3B1O00203 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC15.32■□□□□ 0.04
AP3B1O00203 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC15.32■□□□□ 0.04
AP3B1O00203 CSRNP2-201ENST00000228515 4471 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
AP3B1O00203 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC15.32■□□□□ 0.04
AP3B1O00203 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
AP3B1O00203 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
AP3B1O00203 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC15.32■□□□□ 0.04
AP3B1O00203 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
AP3B1O00203 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
AP3B1O00203 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
AP3B1O00203 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
AP3B1O00203 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
AP3B1O00203 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
AP3B1O00203 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC15.32■□□□□ 0.04
AP3B1O00203 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC15.32■□□□□ 0.04
AP3B1O00203 RRP1B-201ENST00000340648 5090 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
AP3B1O00203 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC15.31■□□□□ 0.04
AP3B1O00203 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC15.31■□□□□ 0.04
AP3B1O00203 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
AP3B1O00203 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC15.31■□□□□ 0.04
AP3B1O00203 RGPD6-202ENST00000330331 2848 ntTSL 2 BASIC15.31■□□□□ 0.04
AP3B1O00203 RGPD8-202ENST00000330575 2848 ntTSL 2 BASIC15.31■□□□□ 0.04
AP3B1O00203 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
AP3B1O00203 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
AP3B1O00203 CDK5RAP2-202ENST00000360190 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
AP3B1O00203 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
AP3B1O00203 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
AP3B1O00203 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
AP3B1O00203 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC15.31■□□□□ 0.04
AP3B1O00203 HIPK3-203ENST00000456517 7399 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
AP3B1O00203 COCH-202ENST00000396618 2536 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
AP3B1O00203 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
AP3B1O00203 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
AP3B1O00203 NSL1-201ENST00000366976 722 ntTSL 2 BASIC15.31■□□□□ 0.04
AP3B1O00203 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC15.31■□□□□ 0.04
AP3B1O00203 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
AP3B1O00203 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
AP3B1O00203 LSM5-207ENST00000410044 687 ntTSL 3 BASIC15.31■□□□□ 0.04
AP3B1O00203 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC15.31■□□□□ 0.04
AP3B1O00203 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
AP3B1O00203 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC15.31■□□□□ 0.04
AP3B1O00203 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
AP3B1O00203 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC15.31■□□□□ 0.04
AP3B1O00203 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC15.31■□□□□ 0.04
AP3B1O00203 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
AP3B1O00203 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC15.31■□□□□ 0.04
AP3B1O00203 DUX4L47-201ENST00000566374 394 ntBASIC15.31■□□□□ 0.04
AP3B1O00203 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC15.31■□□□□ 0.04
AP3B1O00203 AC005498.2-205ENST00000593218 784 ntBASIC15.31■□□□□ 0.04
AP3B1O00203 DKKL1-202ENST00000594268 524 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
AP3B1O00203 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC15.31■□□□□ 0.04
AP3B1O00203 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC15.31■□□□□ 0.04
AP3B1O00203 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 59.8 ms