Protein–RNA interactions for Protein: Q9NP79

VTA1, Vacuolar protein sorting-associated protein VTA1 homolog, humanhuman

Predictions only

Length 307 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1Q9NP79 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
VTA1Q9NP79 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
VTA1Q9NP79 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
VTA1Q9NP79 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
VTA1Q9NP79 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
VTA1Q9NP79 COLEC11-201ENST00000236693 1381 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
VTA1Q9NP79 FAM90A7P-201ENST00000382628 1395 ntBASIC16.77■□□□□ 0.28
VTA1Q9NP79 FAM90A23P-201ENST00000400136 1395 ntBASIC16.77■□□□□ 0.28
VTA1Q9NP79 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
VTA1Q9NP79 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
VTA1Q9NP79 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
VTA1Q9NP79 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC16.77■□□□□ 0.28
VTA1Q9NP79 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
VTA1Q9NP79 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
VTA1Q9NP79 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
VTA1Q9NP79 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
VTA1Q9NP79 AC245369.1-201ENST00000390634 434 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
VTA1Q9NP79 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
VTA1Q9NP79 CD8A-204ENST00000409781 597 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
VTA1Q9NP79 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC16.77■□□□□ 0.28
VTA1Q9NP79 AC008406.1-201ENST00000509530 541 ntTSL 3 BASIC16.77■□□□□ 0.28
VTA1Q9NP79 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.28
VTA1Q9NP79 CPLX2-209ENST00000515094 576 ntAPPRIS P1 TSL 4 BASIC16.77■□□□□ 0.28
VTA1Q9NP79 FADS2-212ENST00000522639 360 ntTSL 5 BASIC16.77■□□□□ 0.28
VTA1Q9NP79 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC16.77■□□□□ 0.28
VTA1Q9NP79 AC015689.1-201ENST00000525365 462 ntTSL 2 BASIC16.77■□□□□ 0.28
VTA1Q9NP79 AC090857.1-201ENST00000527400 390 ntBASIC16.77■□□□□ 0.28
VTA1Q9NP79 NDUFC2-204ENST00000528164 561 ntTSL 2 BASIC16.77■□□□□ 0.28
VTA1Q9NP79 VPS18-202ENST00000558474 873 ntTSL 3 BASIC16.77■□□□□ 0.28
VTA1Q9NP79 FADS2-215ENST00000574708 385 ntTSL 3 BASIC16.77■□□□□ 0.28
VTA1Q9NP79 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC16.77■□□□□ 0.28
VTA1Q9NP79 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC16.77■□□□□ 0.28
VTA1Q9NP79 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
VTA1Q9NP79 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
VTA1Q9NP79 C18orf15-201ENST00000623680 2534 ntBASIC16.77■□□□□ 0.28
VTA1Q9NP79 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC16.77■□□□□ 0.27
VTA1Q9NP79 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
VTA1Q9NP79 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC16.77■□□□□ 0.27
VTA1Q9NP79 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC16.77■□□□□ 0.27
VTA1Q9NP79 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.27
VTA1Q9NP79 OVCH1-AS1-204ENST00000641955 5529 ntBASIC16.77■□□□□ 0.27
VTA1Q9NP79 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
VTA1Q9NP79 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
VTA1Q9NP79 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.27
VTA1Q9NP79 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
VTA1Q9NP79 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
VTA1Q9NP79 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
VTA1Q9NP79 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC16.77■□□□□ 0.27
VTA1Q9NP79 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC16.77■□□□□ 0.27
VTA1Q9NP79 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC16.77■□□□□ 0.27
VTA1Q9NP79 AC023024.2-201ENST00000623561 1993 ntBASIC16.77■□□□□ 0.27
VTA1Q9NP79 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.27
VTA1Q9NP79 WASH3P-207ENST00000560956 1394 ntBASIC16.77■□□□□ 0.27
VTA1Q9NP79 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
VTA1Q9NP79 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
VTA1Q9NP79 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
VTA1Q9NP79 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC16.76■□□□□ 0.27
VTA1Q9NP79 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
VTA1Q9NP79 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
VTA1Q9NP79 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
VTA1Q9NP79 CTSW-204ENST00000528419 1341 ntTSL 2 BASIC16.76■□□□□ 0.27
VTA1Q9NP79 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
VTA1Q9NP79 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
VTA1Q9NP79 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
VTA1Q9NP79 GOLGA8S-201ENST00000562295 1878 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
VTA1Q9NP79 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC16.76■□□□□ 0.27
VTA1Q9NP79 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
VTA1Q9NP79 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
VTA1Q9NP79 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
VTA1Q9NP79 ALG1L-201ENST00000340333 805 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
VTA1Q9NP79 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
VTA1Q9NP79 SERPINE3-201ENST00000400389 1218 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
VTA1Q9NP79 PARVG-202ENST00000415224 999 ntTSL 2 BASIC16.76■□□□□ 0.27
VTA1Q9NP79 FTLP1-201ENST00000449155 526 ntBASIC16.76■□□□□ 0.27
VTA1Q9NP79 AC012507.1-201ENST00000454890 600 ntTSL 4 BASIC16.76■□□□□ 0.27
VTA1Q9NP79 RAMP3-202ENST00000481345 559 ntAPPRIS P2 TSL 4 BASIC16.76■□□□□ 0.27
VTA1Q9NP79 ATP6V1G2-210ENST00000483251 662 ntTSL 3 BASIC16.76■□□□□ 0.27
VTA1Q9NP79 GCOM2-201ENST00000509133 1104 ntBASIC16.76■□□□□ 0.27
VTA1Q9NP79 SCARNA21-201ENST00000517026 139 ntBASIC16.76■□□□□ 0.27
VTA1Q9NP79 GATD1-205ENST00000524550 995 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
VTA1Q9NP79 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC16.76■□□□□ 0.27
VTA1Q9NP79 TP53AIP1-204ENST00000530777 363 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
VTA1Q9NP79 AC131206.1-201ENST00000538078 1211 ntBASIC16.76■□□□□ 0.27
VTA1Q9NP79 AC015660.1-201ENST00000560103 395 ntTSL 3 BASIC16.76■□□□□ 0.27
VTA1Q9NP79 PAM16-211ENST00000575848 518 ntTSL 3 BASIC16.76■□□□□ 0.27
VTA1Q9NP79 PAM16-214ENST00000576217 493 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
VTA1Q9NP79 AC127024.2-201ENST00000581019 789 ntTSL 5 BASIC16.76■□□□□ 0.27
VTA1Q9NP79 AC005962.1-201ENST00000584100 773 ntBASIC16.76■□□□□ 0.27
VTA1Q9NP79 AC020922.3-201ENST00000595064 547 ntBASIC16.76■□□□□ 0.27
VTA1Q9NP79 AL133499.1-201ENST00000596207 608 ntBASIC16.76■□□□□ 0.27
VTA1Q9NP79 ALG1L-202ENST00000611639 701 ntAPPRIS ALT2 TSL 3 BASIC16.76■□□□□ 0.27
VTA1Q9NP79 AC027601.3-201ENST00000622907 509 ntBASIC16.76■□□□□ 0.27
VTA1Q9NP79 AL353726.2-201ENST00000623259 884 ntBASIC16.76■□□□□ 0.27
VTA1Q9NP79 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC16.76■□□□□ 0.27
VTA1Q9NP79 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC16.76■□□□□ 0.27
VTA1Q9NP79 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
VTA1Q9NP79 FAM45A-201ENST00000361432 1648 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
VTA1Q9NP79 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC16.76■□□□□ 0.27
VTA1Q9NP79 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC16.76■□□□□ 0.27
VTA1Q9NP79 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 40.2 ms