Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
SHANK3Q9BYB0 PCCB-215ENST00000482086 1436 ntTSL 3 BASIC18.95■□□□□ 0.62
SHANK3Q9BYB0 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
SHANK3Q9BYB0 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
SHANK3Q9BYB0 BSDC1-205ENST00000446293 1505 ntTSL 2 BASIC18.95■□□□□ 0.62
SHANK3Q9BYB0 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC18.95■□□□□ 0.62
SHANK3Q9BYB0 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC18.95■□□□□ 0.62
SHANK3Q9BYB0 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
SHANK3Q9BYB0 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC18.95■□□□□ 0.62
SHANK3Q9BYB0 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
SHANK3Q9BYB0 PRPF18-202ENST00000378572 1717 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SHANK3Q9BYB0 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
SHANK3Q9BYB0 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC18.95■□□□□ 0.62
SHANK3Q9BYB0 MRPL32-201ENST00000223324 1035 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SHANK3Q9BYB0 SLC50A1-202ENST00000368401 1166 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
SHANK3Q9BYB0 SOX2-OT-208ENST00000477928 902 ntTSL 2 BASIC18.95■□□□□ 0.62
SHANK3Q9BYB0 AC090825.1-202ENST00000560059 665 ntTSL 3 BASIC18.95■□□□□ 0.62
SHANK3Q9BYB0 ETV2-207ENST00000619399 994 ntTSL 5 BASIC18.95■□□□□ 0.62
SHANK3Q9BYB0 FO393412.1-201ENST00000619841 382 ntBASIC18.95■□□□□ 0.62
SHANK3Q9BYB0 AC244250.3-201ENST00000620749 366 ntBASIC18.95■□□□□ 0.62
SHANK3Q9BYB0 AC090386.2-201ENST00000623010 1039 ntBASIC18.95■□□□□ 0.62
SHANK3Q9BYB0 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SHANK3Q9BYB0 MYBPHL-201ENST00000357155 1372 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SHANK3Q9BYB0 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
SHANK3Q9BYB0 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC18.95■□□□□ 0.62
SHANK3Q9BYB0 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
SHANK3Q9BYB0 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SHANK3Q9BYB0 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SHANK3Q9BYB0 IL3RA-201ENST00000331035 1706 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SHANK3Q9BYB0 PAX7-202ENST00000400661 1700 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
SHANK3Q9BYB0 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
SHANK3Q9BYB0 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC18.95■□□□□ 0.62
SHANK3Q9BYB0 GTF3C6-201ENST00000329970 952 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SHANK3Q9BYB0 TRBJ2-6-201ENST00000390418 53 ntAPPRIS P1 BASIC18.94■□□□□ 0.62
SHANK3Q9BYB0 GSTT2-201ENST00000402588 937 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
SHANK3Q9BYB0 Metazoa_SRP.9-201ENST00000415635 283 ntBASIC18.94■□□□□ 0.62
SHANK3Q9BYB0 LINC00866-201ENST00000427379 418 ntTSL 2 BASIC18.94■□□□□ 0.62
SHANK3Q9BYB0 SNHG17-208ENST00000456953 546 ntTSL 3 BASIC18.94■□□□□ 0.62
SHANK3Q9BYB0 AC012213.1-201ENST00000517376 722 ntTSL 3 BASIC18.94■□□□□ 0.62
SHANK3Q9BYB0 AC022858.1-202ENST00000521084 393 ntTSL 3 BASIC18.94■□□□□ 0.62
SHANK3Q9BYB0 DBP-202ENST00000593500 712 ntTSL 2 BASIC18.94■□□□□ 0.62
SHANK3Q9BYB0 LINC01671-201ENST00000419628 1775 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
SHANK3Q9BYB0 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SHANK3Q9BYB0 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
SHANK3Q9BYB0 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
SHANK3Q9BYB0 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
SHANK3Q9BYB0 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
SHANK3Q9BYB0 ING4-207ENST00000446105 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SHANK3Q9BYB0 C3orf52-202ENST00000431717 2054 ntAPPRIS ALT2 TSL 2 BASIC18.94■□□□□ 0.62
SHANK3Q9BYB0 SRPX-205ENST00000538295 1780 ntAPPRIS ALT2 TSL 2 BASIC18.94■□□□□ 0.62
SHANK3Q9BYB0 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SHANK3Q9BYB0 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SHANK3Q9BYB0 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC18.94■□□□□ 0.62
SHANK3Q9BYB0 COX14-201ENST00000317943 708 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
SHANK3Q9BYB0 HCG9-201ENST00000376800 663 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
SHANK3Q9BYB0 AL592076.1-201ENST00000424448 303 ntBASIC18.94■□□□□ 0.62
SHANK3Q9BYB0 LINC00686-201ENST00000435412 332 ntTSL 3 BASIC18.94■□□□□ 0.62
SHANK3Q9BYB0 SUMF2-210ENST00000437307 947 ntTSL 2 BASIC18.94■□□□□ 0.62
SHANK3Q9BYB0 LINC02228-201ENST00000507600 534 ntTSL 2 BASIC18.94■□□□□ 0.62
SHANK3Q9BYB0 AC095040.1-201ENST00000513286 675 ntBASIC18.94■□□□□ 0.62
SHANK3Q9BYB0 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC18.94■□□□□ 0.62
SHANK3Q9BYB0 CD59-210ENST00000528700 652 ntAPPRIS P2 TSL 2 BASIC18.94■□□□□ 0.62
SHANK3Q9BYB0 PIGT-208ENST00000545755 1158 ntTSL 5 BASIC18.94■□□□□ 0.62
SHANK3Q9BYB0 LINC02176-201ENST00000569104 598 ntTSL 4 BASIC18.94■□□□□ 0.62
SHANK3Q9BYB0 TMEM205-210ENST00000588560 840 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
SHANK3Q9BYB0 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SHANK3Q9BYB0 NFYC-215ENST00000456393 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SHANK3Q9BYB0 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC18.94■□□□□ 0.62
SHANK3Q9BYB0 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC18.94■□□□□ 0.62
SHANK3Q9BYB0 AC010096.1-201ENST00000443897 1709 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
SHANK3Q9BYB0 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
SHANK3Q9BYB0 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
SHANK3Q9BYB0 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SHANK3Q9BYB0 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
SHANK3Q9BYB0 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC18.93■□□□□ 0.62
SHANK3Q9BYB0 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC18.93■□□□□ 0.62
SHANK3Q9BYB0 PPT1-215ENST00000641471 2368 ntBASIC18.93■□□□□ 0.62
SHANK3Q9BYB0 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
SHANK3Q9BYB0 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC18.93■□□□□ 0.62
SHANK3Q9BYB0 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SHANK3Q9BYB0 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC18.93■□□□□ 0.62
SHANK3Q9BYB0 DOC2GP-204ENST00000639052 2548 ntBASIC18.93■□□□□ 0.62
SHANK3Q9BYB0 LCMT1-202ENST00000380966 989 ntTSL 2 BASIC18.93■□□□□ 0.62
SHANK3Q9BYB0 AC019118.2-201ENST00000425776 718 ntTSL 5 BASIC18.93■□□□□ 0.62
SHANK3Q9BYB0 EHMT2-AS1-201ENST00000434689 373 ntTSL 3 BASIC18.93■□□□□ 0.62
SHANK3Q9BYB0 AL691482.3-201ENST00000504773 987 ntTSL 2 BASIC18.93■□□□□ 0.62
SHANK3Q9BYB0 SNHG25-202ENST00000582965 278 ntTSL 2 BASIC18.93■□□□□ 0.62
SHANK3Q9BYB0 RN7SL470P-201ENST00000583069 259 ntBASIC18.93■□□□□ 0.62
SHANK3Q9BYB0 TREX1-206ENST00000629913 945 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
SHANK3Q9BYB0 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
SHANK3Q9BYB0 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC18.93■□□□□ 0.62
SHANK3Q9BYB0 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
SHANK3Q9BYB0 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC18.93■□□□□ 0.62
SHANK3Q9BYB0 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC18.93■□□□□ 0.62
SHANK3Q9BYB0 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
SHANK3Q9BYB0 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC18.93■□□□□ 0.62
SHANK3Q9BYB0 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
SHANK3Q9BYB0 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC18.92■□□□□ 0.62
SHANK3Q9BYB0 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
SHANK3Q9BYB0 PRAL-201ENST00000624952 3286 ntBASIC18.92■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms