Protein–RNA interactions for Protein: Q7Z407

CSMD3, CUB and sushi domain-containing protein 3, humanhuman

Predictions only

Length 3,707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3Q7Z407 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC10.26□□□□□ -0.77
CSMD3Q7Z407 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC10.26□□□□□ -0.77
CSMD3Q7Z407 AC006504.5-208ENST00000588784 2401 ntBASIC10.26□□□□□ -0.77
CSMD3Q7Z407 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC10.26□□□□□ -0.77
CSMD3Q7Z407 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC10.26□□□□□ -0.77
CSMD3Q7Z407 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
CSMD3Q7Z407 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC10.26□□□□□ -0.77
CSMD3Q7Z407 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC10.26□□□□□ -0.77
CSMD3Q7Z407 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC10.26□□□□□ -0.77
CSMD3Q7Z407 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC10.26□□□□□ -0.77
CSMD3Q7Z407 HIST1H1B-201ENST00000331442 681 ntAPPRIS P1 BASIC10.26□□□□□ -0.77
CSMD3Q7Z407 HNRNPA1P42-201ENST00000458678 957 ntBASIC10.26□□□□□ -0.77
CSMD3Q7Z407 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC10.26□□□□□ -0.77
CSMD3Q7Z407 PGAM1P12-201ENST00000505622 748 ntBASIC10.26□□□□□ -0.77
CSMD3Q7Z407 AC113391.2-201ENST00000512245 553 ntTSL 4 BASIC10.26□□□□□ -0.77
CSMD3Q7Z407 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC10.26□□□□□ -0.77
CSMD3Q7Z407 AL109809.1-201ENST00000418979 1367 ntBASIC10.26□□□□□ -0.77
CSMD3Q7Z407 UPK1A-203ENST00000616789 1366 ntTSL 5 BASIC10.26□□□□□ -0.77
CSMD3Q7Z407 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC10.26□□□□□ -0.77
CSMD3Q7Z407 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC10.26□□□□□ -0.77
CSMD3Q7Z407 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC10.26□□□□□ -0.77
CSMD3Q7Z407 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
CSMD3Q7Z407 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC10.26□□□□□ -0.77
CSMD3Q7Z407 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC10.26□□□□□ -0.77
CSMD3Q7Z407 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC10.26□□□□□ -0.77
CSMD3Q7Z407 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC10.26□□□□□ -0.77
CSMD3Q7Z407 RPL10-202ENST00000369817 1284 ntAPPRIS P1 TSL 5 BASIC10.26□□□□□ -0.77
CSMD3Q7Z407 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
CSMD3Q7Z407 PLAC9P1-201ENST00000397540 389 ntTSL 2 BASIC10.26□□□□□ -0.77
CSMD3Q7Z407 DCAF7-201ENST00000415273 1220 ntTSL 2 BASIC10.26□□□□□ -0.77
CSMD3Q7Z407 OGFR-AS1-201ENST00000431361 668 ntTSL 2 BASIC10.26□□□□□ -0.77
CSMD3Q7Z407 AL080250.1-201ENST00000438676 445 ntTSL 5 BASIC10.26□□□□□ -0.77
CSMD3Q7Z407 AC084030.1-201ENST00000455068 561 ntTSL 4 BASIC10.26□□□□□ -0.77
CSMD3Q7Z407 AC093752.3-201ENST00000567343 901 ntBASIC10.26□□□□□ -0.77
CSMD3Q7Z407 AC023389.1-201ENST00000577846 576 ntTSL 4 BASIC10.26□□□□□ -0.77
CSMD3Q7Z407 PEBP1P2-201ENST00000603980 558 ntBASIC10.26□□□□□ -0.77
CSMD3Q7Z407 AL022334.2-201ENST00000610000 484 ntBASIC10.26□□□□□ -0.77
CSMD3Q7Z407 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC10.26□□□□□ -0.77
CSMD3Q7Z407 AC011471.3-201ENST00000623576 402 ntBASIC10.26□□□□□ -0.77
CSMD3Q7Z407 CYP4B1-215ENST00000640628 969 ntTSL 5 BASIC10.26□□□□□ -0.77
CSMD3Q7Z407 ABR-203ENST00000536794 2213 ntTSL 2 BASIC10.26□□□□□ -0.77
CSMD3Q7Z407 DNMT3L-204ENST00000628202 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC10.26□□□□□ -0.77
CSMD3Q7Z407 GPD1-205ENST00000548814 1591 ntTSL 2 BASIC10.26□□□□□ -0.77
CSMD3Q7Z407 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC10.26□□□□□ -0.77
CSMD3Q7Z407 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC10.26□□□□□ -0.77
CSMD3Q7Z407 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC10.26□□□□□ -0.77
CSMD3Q7Z407 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC10.26□□□□□ -0.77
CSMD3Q7Z407 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC10.26□□□□□ -0.77
CSMD3Q7Z407 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
CSMD3Q7Z407 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC10.26□□□□□ -0.77
CSMD3Q7Z407 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC10.25□□□□□ -0.77
CSMD3Q7Z407 AC093673.1-201ENST00000429630 648 ntTSL 2 BASIC10.25□□□□□ -0.77
CSMD3Q7Z407 AC109479.3-201ENST00000520163 360 ntTSL 3 BASIC10.25□□□□□ -0.77
CSMD3Q7Z407 AC010504.1-201ENST00000591311 585 ntTSL 3 BASIC10.25□□□□□ -0.77
CSMD3Q7Z407 AL139339.2-201ENST00000608063 657 ntBASIC10.25□□□□□ -0.77
CSMD3Q7Z407 IQSEC2-207ENST00000638583 722 ntTSL 5 BASIC10.25□□□□□ -0.77
CSMD3Q7Z407 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC10.25□□□□□ -0.77
CSMD3Q7Z407 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC10.25□□□□□ -0.77
CSMD3Q7Z407 ADSL-201ENST00000216194 1620 ntTSL 2 BASIC10.25□□□□□ -0.77
CSMD3Q7Z407 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC10.25□□□□□ -0.77
CSMD3Q7Z407 SNRPN-203ENST00000400097 1605 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
CSMD3Q7Z407 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
CSMD3Q7Z407 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
CSMD3Q7Z407 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC10.25□□□□□ -0.77
CSMD3Q7Z407 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC10.25□□□□□ -0.77
CSMD3Q7Z407 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC10.25□□□□□ -0.77
CSMD3Q7Z407 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
CSMD3Q7Z407 CELP-203ENST00000624767 2414 ntTSL 5 BASIC10.25□□□□□ -0.77
CSMD3Q7Z407 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
CSMD3Q7Z407 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC10.25□□□□□ -0.77
CSMD3Q7Z407 SCAMP1-AS1-201ENST00000421004 1479 ntTSL 1 (best) BASIC10.25□□□□□ -0.77
CSMD3Q7Z407 PML-208ENST00000436891 3010 ntAPPRIS ALT2 TSL 5 BASIC10.25□□□□□ -0.77
CSMD3Q7Z407 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC10.25□□□□□ -0.77
CSMD3Q7Z407 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC10.25□□□□□ -0.77
CSMD3Q7Z407 TOMM20L-201ENST00000360945 620 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
CSMD3Q7Z407 HIGD1A-203ENST00000430190 741 ntTSL 2 BASIC10.25□□□□□ -0.77
CSMD3Q7Z407 RPL9-203ENST00000449470 1127 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
CSMD3Q7Z407 MT1H-202ENST00000569155 697 ntTSL 1 (best) BASIC10.25□□□□□ -0.77
CSMD3Q7Z407 RN7SL470P-201ENST00000583069 259 ntBASIC10.25□□□□□ -0.77
CSMD3Q7Z407 ZNF772-207ENST00000601768 482 ntTSL 3 BASIC10.25□□□□□ -0.77
CSMD3Q7Z407 AL627230.2-201ENST00000613254 655 ntBASIC10.25□□□□□ -0.77
CSMD3Q7Z407 CR392039.1-201ENST00000623217 204 ntBASIC10.25□□□□□ -0.77
CSMD3Q7Z407 CD79B-201ENST00000006750 1269 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
CSMD3Q7Z407 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC10.25□□□□□ -0.77
CSMD3Q7Z407 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
CSMD3Q7Z407 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC10.25□□□□□ -0.77
CSMD3Q7Z407 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC10.25□□□□□ -0.77
CSMD3Q7Z407 AL391005.1-201ENST00000623953 2435 ntBASIC10.25□□□□□ -0.77
CSMD3Q7Z407 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
CSMD3Q7Z407 EFHC1-227ENST00000637089 2133 ntTSL 5 BASIC10.25□□□□□ -0.77
CSMD3Q7Z407 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC10.25□□□□□ -0.77
CSMD3Q7Z407 API5-203ENST00000455725 2257 ntTSL 2 BASIC10.25□□□□□ -0.77
CSMD3Q7Z407 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC10.25□□□□□ -0.77
CSMD3Q7Z407 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC10.25□□□□□ -0.77
CSMD3Q7Z407 GCKR-201ENST00000264717 2186 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
CSMD3Q7Z407 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC10.25□□□□□ -0.77
CSMD3Q7Z407 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
CSMD3Q7Z407 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC10.25□□□□□ -0.77
CSMD3Q7Z407 NRSN2-201ENST00000382285 1047 ntAPPRIS P1 TSL 2 BASIC10.25□□□□□ -0.77
CSMD3Q7Z407 Z69890.1-201ENST00000382990 339 ntBASIC10.25□□□□□ -0.77
Retrieved 100 of 98,524 protein–RNA pairs in 61.8 ms