Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC13.56□□□□□ -0.24
H3F3AP84243 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC13.56□□□□□ -0.24
H3F3AP84243 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
H3F3AP84243 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
H3F3AP84243 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC13.56□□□□□ -0.24
H3F3AP84243 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
H3F3AP84243 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
H3F3AP84243 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
H3F3AP84243 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
H3F3AP84243 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC13.56□□□□□ -0.24
H3F3AP84243 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC13.56□□□□□ -0.24
H3F3AP84243 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC13.56□□□□□ -0.24
H3F3AP84243 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC13.56□□□□□ -0.24
H3F3AP84243 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
H3F3AP84243 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC13.56□□□□□ -0.24
H3F3AP84243 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC13.56□□□□□ -0.24
H3F3AP84243 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC13.56□□□□□ -0.24
H3F3AP84243 BTNL10-201ENST00000595971 695 ntBASIC13.56□□□□□ -0.24
H3F3AP84243 AC233724.13-201ENST00000598383 410 ntBASIC13.56□□□□□ -0.24
H3F3AP84243 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC13.56□□□□□ -0.24
H3F3AP84243 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC13.56□□□□□ -0.24
H3F3AP84243 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC13.56□□□□□ -0.24
H3F3AP84243 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC13.56□□□□□ -0.24
H3F3AP84243 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC13.56□□□□□ -0.24
H3F3AP84243 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
H3F3AP84243 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC13.56□□□□□ -0.24
H3F3AP84243 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
H3F3AP84243 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
H3F3AP84243 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
H3F3AP84243 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC13.56□□□□□ -0.24
H3F3AP84243 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
H3F3AP84243 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
H3F3AP84243 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
H3F3AP84243 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC13.56□□□□□ -0.24
H3F3AP84243 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC13.56□□□□□ -0.24
H3F3AP84243 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
H3F3AP84243 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC13.56□□□□□ -0.24
H3F3AP84243 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
H3F3AP84243 NEURL1-201ENST00000369780 4314 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
H3F3AP84243 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
H3F3AP84243 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
H3F3AP84243 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC13.55□□□□□ -0.24
H3F3AP84243 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC13.55□□□□□ -0.24
H3F3AP84243 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
H3F3AP84243 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
H3F3AP84243 LRRC59-203ENST00000576448 1531 ntBASIC13.55□□□□□ -0.24
H3F3AP84243 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC13.55□□□□□ -0.24
H3F3AP84243 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
H3F3AP84243 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
H3F3AP84243 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
H3F3AP84243 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC13.55□□□□□ -0.24
H3F3AP84243 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
H3F3AP84243 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC13.55□□□□□ -0.24
H3F3AP84243 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC13.55□□□□□ -0.24
H3F3AP84243 MGST3-203ENST00000367885 680 ntTSL 2 BASIC13.55□□□□□ -0.24
H3F3AP84243 AC092933.1-201ENST00000393644 945 ntBASIC13.55□□□□□ -0.24
H3F3AP84243 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC13.55□□□□□ -0.24
H3F3AP84243 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC13.55□□□□□ -0.24
H3F3AP84243 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
H3F3AP84243 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC13.55□□□□□ -0.24
H3F3AP84243 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
H3F3AP84243 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC13.55□□□□□ -0.24
H3F3AP84243 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC13.55□□□□□ -0.24
H3F3AP84243 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
H3F3AP84243 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
H3F3AP84243 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC13.55□□□□□ -0.24
H3F3AP84243 PIGL-212ENST00000581006 554 ntTSL 4 BASIC13.55□□□□□ -0.24
H3F3AP84243 GNRHR2-203ENST00000581100 1187 ntBASIC13.55□□□□□ -0.24
H3F3AP84243 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC13.55□□□□□ -0.24
H3F3AP84243 AC145423.3-201ENST00000615987 467 ntBASIC13.55□□□□□ -0.24
H3F3AP84243 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC13.55□□□□□ -0.24
H3F3AP84243 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC13.55□□□□□ -0.24
H3F3AP84243 PTPRO-201ENST00000281171 5301 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
H3F3AP84243 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
H3F3AP84243 AL138709.1-201ENST00000614840 1693 ntBASIC13.55□□□□□ -0.24
H3F3AP84243 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC13.55□□□□□ -0.24
H3F3AP84243 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC13.55□□□□□ -0.24
H3F3AP84243 AC239800.3-201ENST00000424684 5243 ntTSL 5 BASIC13.55□□□□□ -0.24
H3F3AP84243 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC13.55□□□□□ -0.24
H3F3AP84243 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
H3F3AP84243 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC13.55□□□□□ -0.24
H3F3AP84243 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
H3F3AP84243 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
H3F3AP84243 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC13.55□□□□□ -0.24
H3F3AP84243 NWD2-201ENST00000309447 8325 ntAPPRIS P1 TSL 5 BASIC13.55□□□□□ -0.24
H3F3AP84243 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC13.55□□□□□ -0.24
H3F3AP84243 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
H3F3AP84243 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
H3F3AP84243 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
H3F3AP84243 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC13.55□□□□□ -0.24
H3F3AP84243 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
H3F3AP84243 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
H3F3AP84243 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
H3F3AP84243 COL7A1-201ENST00000328333 9276 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
H3F3AP84243 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC13.54□□□□□ -0.24
H3F3AP84243 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC13.54□□□□□ -0.24
H3F3AP84243 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC13.54□□□□□ -0.24
H3F3AP84243 CEP170B-204ENST00000556508 6683 ntTSL 5 BASIC13.54□□□□□ -0.24
H3F3AP84243 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
H3F3AP84243 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms