Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
PKNOX1P55347 AC087499.5-201ENST00000452760 1342 ntBASIC14.93□□□□□ -0.02
PKNOX1P55347 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC14.93□□□□□ -0.02
PKNOX1P55347 SLC2A11-223ENST00000611880 3264 ntTSL 2 BASIC14.93□□□□□ -0.02
PKNOX1P55347 AC090099.1-203ENST00000527059 2945 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
PKNOX1P55347 KCP-206ENST00000613019 4853 ntAPPRIS P5 TSL 5 BASIC14.93□□□□□ -0.02
PKNOX1P55347 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
PKNOX1P55347 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
PKNOX1P55347 SMTN-202ENST00000347557 3130 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
PKNOX1P55347 AFAP1L1-205ENST00000515000 2319 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
PKNOX1P55347 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC14.93□□□□□ -0.02
PKNOX1P55347 AC104836.1-202ENST00000636805 6041 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
PKNOX1P55347 MEX3B-201ENST00000329713 3528 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
PKNOX1P55347 PODN-207ENST00000618387 3065 ntAPPRIS ALT2 TSL 2 BASIC14.93□□□□□ -0.02
PKNOX1P55347 APBA1-201ENST00000265381 6534 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
PKNOX1P55347 FAM219A-209ENST00000445726 3644 ntAPPRIS ALT1 TSL 2 BASIC14.93□□□□□ -0.02
PKNOX1P55347 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
PKNOX1P55347 DNER-201ENST00000341772 3260 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
PKNOX1P55347 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
PKNOX1P55347 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
PKNOX1P55347 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC14.93□□□□□ -0.02
PKNOX1P55347 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
PKNOX1P55347 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC14.93□□□□□ -0.02
PKNOX1P55347 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC14.93□□□□□ -0.02
PKNOX1P55347 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC14.93□□□□□ -0.02
PKNOX1P55347 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC14.93□□□□□ -0.02
PKNOX1P55347 AC125807.1-201ENST00000483097 614 ntBASIC14.93□□□□□ -0.02
PKNOX1P55347 SLBP-205ENST00000488267 987 ntTSL 2 BASIC14.93□□□□□ -0.02
PKNOX1P55347 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC14.93□□□□□ -0.02
PKNOX1P55347 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
PKNOX1P55347 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC14.93□□□□□ -0.02
PKNOX1P55347 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
PKNOX1P55347 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
PKNOX1P55347 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
PKNOX1P55347 AC025678.2-201ENST00000562061 970 ntBASIC14.93□□□□□ -0.02
PKNOX1P55347 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC14.93□□□□□ -0.02
PKNOX1P55347 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC14.93□□□□□ -0.02
PKNOX1P55347 AC015911.4-201ENST00000588022 1070 ntBASIC14.93□□□□□ -0.02
PKNOX1P55347 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC14.93□□□□□ -0.02
PKNOX1P55347 AL596442.2-201ENST00000610240 980 ntBASIC14.93□□□□□ -0.02
PKNOX1P55347 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
PKNOX1P55347 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC14.93□□□□□ -0.02
PKNOX1P55347 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC14.93□□□□□ -0.02
PKNOX1P55347 NIN-202ENST00000324330 4364 ntTSL 5 BASIC14.93□□□□□ -0.02
PKNOX1P55347 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
PKNOX1P55347 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC14.93□□□□□ -0.02
PKNOX1P55347 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
PKNOX1P55347 AC107918.4-201ENST00000641966 3141 ntBASIC14.93□□□□□ -0.02
PKNOX1P55347 PRDM15-201ENST00000269844 4881 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
PKNOX1P55347 FZD5-201ENST00000295417 6708 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
PKNOX1P55347 TMPRSS2-202ENST00000398585 3240 ntTSL 2 BASIC14.93□□□□□ -0.02
PKNOX1P55347 CEP164-201ENST00000278935 5630 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
PKNOX1P55347 AXL-201ENST00000301178 4737 ntAPPRIS P4 TSL 1 (best) BASIC14.93□□□□□ -0.02
PKNOX1P55347 AC007787.1-201ENST00000588095 1583 ntBASIC14.93□□□□□ -0.02
PKNOX1P55347 TAF6-205ENST00000437822 2318 ntTSL 2 BASIC14.93□□□□□ -0.02
PKNOX1P55347 JPH1-201ENST00000342232 4378 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
PKNOX1P55347 TMEM132E-203ENST00000631683 4379 ntAPPRIS P2 TSL 5 BASIC14.93□□□□□ -0.02
PKNOX1P55347 GLIS2-202ENST00000433375 3705 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
PKNOX1P55347 ZNF831-201ENST00000371030 9401 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
PKNOX1P55347 SOX21-AS1-201ENST00000438290 3287 ntTSL 2 BASIC14.93□□□□□ -0.02
PKNOX1P55347 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
PKNOX1P55347 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
PKNOX1P55347 AC067750.1-201ENST00000608826 6545 ntBASIC14.92□□□□□ -0.02
PKNOX1P55347 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
PKNOX1P55347 WDR27-201ENST00000423258 2465 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
PKNOX1P55347 OSMR-201ENST00000274276 5539 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
PKNOX1P55347 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC14.92□□□□□ -0.02
PKNOX1P55347 AC018529.2-202ENST00000611482 3087 ntBASIC14.92□□□□□ -0.02
PKNOX1P55347 HDAC2-206ENST00000519108 2000 ntTSL 2 BASIC14.92□□□□□ -0.02
PKNOX1P55347 PCDHB14-201ENST00000239449 4828 ntAPPRIS P1 BASIC14.92□□□□□ -0.02
PKNOX1P55347 FES-203ENST00000394302 2133 ntTSL 5 BASIC14.92□□□□□ -0.02
PKNOX1P55347 CACNA2D1-201ENST00000356253 3858 ntTSL 5 BASIC14.92□□□□□ -0.02
PKNOX1P55347 IL17RD-203ENST00000463523 2348 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
PKNOX1P55347 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
PKNOX1P55347 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
PKNOX1P55347 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
PKNOX1P55347 BAD-202ENST00000394531 631 ntTSL 3 BASIC14.92□□□□□ -0.02
PKNOX1P55347 SYS1-203ENST00000414310 795 ntTSL 3 BASIC14.92□□□□□ -0.02
PKNOX1P55347 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
PKNOX1P55347 KLF2P3-201ENST00000451977 1087 ntBASIC14.92□□□□□ -0.02
PKNOX1P55347 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
PKNOX1P55347 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC14.92□□□□□ -0.02
PKNOX1P55347 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC14.92□□□□□ -0.02
PKNOX1P55347 BAD-207ENST00000544785 525 ntTSL 3 BASIC14.92□□□□□ -0.02
PKNOX1P55347 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC14.92□□□□□ -0.02
PKNOX1P55347 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
PKNOX1P55347 AC140878.1-201ENST00000565277 250 ntBASIC14.92□□□□□ -0.02
PKNOX1P55347 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC14.92□□□□□ -0.02
PKNOX1P55347 CCNJ-201ENST00000265992 4115 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
PKNOX1P55347 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
PKNOX1P55347 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
PKNOX1P55347 LRRC17-202ENST00000339431 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
PKNOX1P55347 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC14.92□□□□□ -0.02
PKNOX1P55347 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
PKNOX1P55347 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC14.92□□□□□ -0.02
PKNOX1P55347 SFXN3-201ENST00000224807 3089 ntTSL 5 BASIC14.92□□□□□ -0.02
PKNOX1P55347 ZNF655-212ENST00000424881 4666 ntAPPRIS ALT2 TSL 2 BASIC14.92□□□□□ -0.02
PKNOX1P55347 GDF11-201ENST00000257868 8657 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.02
PKNOX1P55347 MINPP1-202ENST00000371996 2415 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
PKNOX1P55347 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 59.7 ms