Protein–RNA interactions for Protein: P52945

PDX1, Pancreas/duodenum homeobox protein 1, humanhuman

Predictions only

Length 283 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDX1P52945 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC14.72□□□□□ -0.05
PDX1P52945 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
PDX1P52945 WDR3-202ENST00000369441 1035 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
PDX1P52945 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC14.72□□□□□ -0.05
PDX1P52945 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC14.72□□□□□ -0.05
PDX1P52945 TMEM52-203ENST00000378602 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
PDX1P52945 MIR663B-201ENST00000408361 115 ntBASIC14.72□□□□□ -0.05
PDX1P52945 PRKG1-AS1-201ENST00000420193 971 ntTSL 3 BASIC14.72□□□□□ -0.05
PDX1P52945 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC14.72□□□□□ -0.05
PDX1P52945 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC14.72□□□□□ -0.05
PDX1P52945 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC14.72□□□□□ -0.05
PDX1P52945 BX284668.4-201ENST00000453917 508 ntBASIC14.72□□□□□ -0.05
PDX1P52945 AC004471.1-201ENST00000456035 582 ntTSL 4 BASIC14.72□□□□□ -0.05
PDX1P52945 AKR7A2P1-201ENST00000460134 915 ntBASIC14.72□□□□□ -0.05
PDX1P52945 LRRC37A6P-204ENST00000575554 573 ntTSL 3 BASIC14.72□□□□□ -0.05
PDX1P52945 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC14.72□□□□□ -0.05
PDX1P52945 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC14.72□□□□□ -0.05
PDX1P52945 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC14.72□□□□□ -0.05
PDX1P52945 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
PDX1P52945 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC14.72□□□□□ -0.05
PDX1P52945 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC14.72□□□□□ -0.05
PDX1P52945 MRFAP1-202ENST00000382581 1584 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
PDX1P52945 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC14.72□□□□□ -0.05
PDX1P52945 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
PDX1P52945 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC14.72□□□□□ -0.05
PDX1P52945 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
PDX1P52945 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
PDX1P52945 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC14.72□□□□□ -0.05
PDX1P52945 UNC13A-202ENST00000519716 9838 ntAPPRIS P2 TSL 5 BASIC14.72□□□□□ -0.05
PDX1P52945 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
PDX1P52945 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
PDX1P52945 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
PDX1P52945 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
PDX1P52945 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC14.71□□□□□ -0.05
PDX1P52945 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
PDX1P52945 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
PDX1P52945 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
PDX1P52945 AC127383.1-201ENST00000444697 1800 ntBASIC14.71□□□□□ -0.05
PDX1P52945 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
PDX1P52945 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC14.71□□□□□ -0.05
PDX1P52945 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
PDX1P52945 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
PDX1P52945 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
PDX1P52945 AC138028.6-201ENST00000616106 1482 ntBASIC14.71□□□□□ -0.05
PDX1P52945 CLEC16A-203ENST00000409790 6891 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.05
PDX1P52945 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC14.71□□□□□ -0.05
PDX1P52945 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC14.71□□□□□ -0.05
PDX1P52945 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC14.71□□□□□ -0.05
PDX1P52945 ARRB2-204ENST00000412477 1779 ntTSL 2 BASIC14.71□□□□□ -0.05
PDX1P52945 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
PDX1P52945 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC14.71□□□□□ -0.05
PDX1P52945 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
PDX1P52945 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC14.71□□□□□ -0.05
PDX1P52945 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
PDX1P52945 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
PDX1P52945 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC14.71□□□□□ -0.05
PDX1P52945 CTNNBIP1-202ENST00000377258 852 ntAPPRIS P1 TSL 3 BASIC14.71□□□□□ -0.05
PDX1P52945 HNRNPA1P32-201ENST00000396326 963 ntBASIC14.71□□□□□ -0.05
PDX1P52945 CIDEC-203ENST00000423850 1036 ntTSL 2 BASIC14.71□□□□□ -0.05
PDX1P52945 AC016723.1-201ENST00000430546 633 ntTSL 3 BASIC14.71□□□□□ -0.05
PDX1P52945 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC14.71□□□□□ -0.05
PDX1P52945 HSPB1P2-201ENST00000448722 546 ntBASIC14.71□□□□□ -0.05
PDX1P52945 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
PDX1P52945 HIST2H2BC-201ENST00000498492 580 ntBASIC14.71□□□□□ -0.05
PDX1P52945 SCARNA20.5-201ENST00000516991 142 ntBASIC14.71□□□□□ -0.05
PDX1P52945 NEU3-202ENST00000526068 431 ntTSL 2 BASIC14.71□□□□□ -0.05
PDX1P52945 CYBA-208ENST00000567174 1085 ntTSL 2 BASIC14.71□□□□□ -0.05
PDX1P52945 AC021594.1-201ENST00000587174 636 ntTSL 3 BASIC14.71□□□□□ -0.05
PDX1P52945 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC14.71□□□□□ -0.05
PDX1P52945 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC14.71□□□□□ -0.05
PDX1P52945 AC244452.3-201ENST00000636814 210 ntBASIC14.71□□□□□ -0.05
PDX1P52945 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
PDX1P52945 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
PDX1P52945 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
PDX1P52945 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.05
PDX1P52945 AL023775.1-201ENST00000454907 1746 ntBASIC14.71□□□□□ -0.05
PDX1P52945 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
PDX1P52945 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
PDX1P52945 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
PDX1P52945 COL5A1-208ENST00000618395 8437 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.05
PDX1P52945 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
PDX1P52945 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC14.71□□□□□ -0.06
PDX1P52945 FBXO41-201ENST00000295133 6928 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
PDX1P52945 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
PDX1P52945 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC14.71□□□□□ -0.06
PDX1P52945 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC14.71□□□□□ -0.06
PDX1P52945 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC14.71□□□□□ -0.06
PDX1P52945 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC14.71□□□□□ -0.06
PDX1P52945 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.06
PDX1P52945 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
PDX1P52945 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC14.7□□□□□ -0.06
PDX1P52945 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
PDX1P52945 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC14.7□□□□□ -0.06
PDX1P52945 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
PDX1P52945 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
PDX1P52945 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC14.7□□□□□ -0.06
PDX1P52945 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
PDX1P52945 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
PDX1P52945 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC14.7□□□□□ -0.06
PDX1P52945 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 81.3 ms