Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 AGAP1-201ENST00000304032 10832 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
RFX3P48380 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
RFX3P48380 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC14.33□□□□□ -0.12
RFX3P48380 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC14.33□□□□□ -0.12
RFX3P48380 AC023908.3-201ENST00000564211 3047 ntBASIC14.33□□□□□ -0.12
RFX3P48380 ARHGAP27-203ENST00000428638 4242 ntAPPRIS P2 TSL 5 BASIC14.33□□□□□ -0.12
RFX3P48380 PDE7A-203ENST00000401827 3673 ntAPPRIS ALT1 TSL 1 (best) BASIC14.33□□□□□ -0.12
RFX3P48380 KCNT1-212ENST00000628528 7057 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.12
RFX3P48380 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
RFX3P48380 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
RFX3P48380 GCFC2-211ENST00000541687 4318 ntTSL 2 BASIC14.32□□□□□ -0.12
RFX3P48380 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
RFX3P48380 PARN-202ENST00000420015 2360 ntTSL 2 BASIC14.32□□□□□ -0.12
RFX3P48380 OSBPL1A-201ENST00000319481 4195 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
RFX3P48380 RNF150-201ENST00000306799 4535 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
RFX3P48380 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
RFX3P48380 PPP2R5E-201ENST00000337537 6659 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
RFX3P48380 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC14.32□□□□□ -0.12
RFX3P48380 OGFOD3-201ENST00000313056 4287 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
RFX3P48380 PHLDB2-204ENST00000431670 6127 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
RFX3P48380 SLC4A7-212ENST00000446700 4000 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
RFX3P48380 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
RFX3P48380 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC14.32□□□□□ -0.12
RFX3P48380 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC14.32□□□□□ -0.12
RFX3P48380 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
RFX3P48380 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC14.32□□□□□ -0.12
RFX3P48380 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
RFX3P48380 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
RFX3P48380 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
RFX3P48380 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
RFX3P48380 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC14.32□□□□□ -0.12
RFX3P48380 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
RFX3P48380 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC14.32□□□□□ -0.12
RFX3P48380 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC14.32□□□□□ -0.12
RFX3P48380 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC14.32□□□□□ -0.12
RFX3P48380 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
RFX3P48380 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC14.32□□□□□ -0.12
RFX3P48380 RARRES2P5-201ENST00000564013 466 ntBASIC14.32□□□□□ -0.12
RFX3P48380 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
RFX3P48380 AL096865.1-201ENST00000606796 927 ntBASIC14.32□□□□□ -0.12
RFX3P48380 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
RFX3P48380 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
RFX3P48380 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
RFX3P48380 ACOX1-201ENST00000293217 7514 ntAPPRIS P5 TSL 1 (best) BASIC14.32□□□□□ -0.12
RFX3P48380 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
RFX3P48380 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC14.32□□□□□ -0.12
RFX3P48380 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
RFX3P48380 TNIK-202ENST00000341852 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
RFX3P48380 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
RFX3P48380 ARRDC4-201ENST00000268042 4072 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
RFX3P48380 PRMT9-201ENST00000322396 3528 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
RFX3P48380 RGPD6-202ENST00000330331 2848 ntTSL 2 BASIC14.32□□□□□ -0.12
RFX3P48380 RGPD8-202ENST00000330575 2848 ntTSL 2 BASIC14.32□□□□□ -0.12
RFX3P48380 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC14.32□□□□□ -0.12
RFX3P48380 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
RFX3P48380 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
RFX3P48380 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC14.31□□□□□ -0.12
RFX3P48380 RIMBP2-201ENST00000261655 6321 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
RFX3P48380 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC14.31□□□□□ -0.12
RFX3P48380 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
RFX3P48380 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC14.31□□□□□ -0.12
RFX3P48380 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC14.31□□□□□ -0.12
RFX3P48380 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC14.31□□□□□ -0.12
RFX3P48380 FUK-202ENST00000378912 3925 ntTSL 2 BASIC14.31□□□□□ -0.12
RFX3P48380 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
RFX3P48380 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
RFX3P48380 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
RFX3P48380 KRBOX4-202ENST00000344302 2774 ntAPPRIS ALT2 TSL 2 BASIC14.31□□□□□ -0.12
RFX3P48380 RBM47-203ENST00000381795 4473 ntAPPRIS P3 TSL 2 BASIC14.31□□□□□ -0.12
RFX3P48380 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
RFX3P48380 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
RFX3P48380 AGAP7P-201ENST00000582299 2062 ntBASIC14.31□□□□□ -0.12
RFX3P48380 AGAP14-201ENST00000624701 2060 ntBASIC14.31□□□□□ -0.12
RFX3P48380 UMODL1-204ENST00000400427 5442 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
RFX3P48380 CDK12-201ENST00000430627 5918 ntAPPRIS ALT1 TSL 1 (best) BASIC14.31□□□□□ -0.12
RFX3P48380 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC14.31□□□□□ -0.12
RFX3P48380 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC14.31□□□□□ -0.12
RFX3P48380 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
RFX3P48380 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC14.31□□□□□ -0.12
RFX3P48380 AC104596.2-201ENST00000512793 793 ntBASIC14.31□□□□□ -0.12
RFX3P48380 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC14.31□□□□□ -0.12
RFX3P48380 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC14.31□□□□□ -0.12
RFX3P48380 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
RFX3P48380 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC14.31□□□□□ -0.12
RFX3P48380 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC14.31□□□□□ -0.12
RFX3P48380 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC14.31□□□□□ -0.12
RFX3P48380 HFE2-206ENST00000634927 506 ntTSL 4 BASIC14.31□□□□□ -0.12
RFX3P48380 ZMYM3-206ENST00000373988 6021 ntAPPRIS ALT1 TSL 5 BASIC14.31□□□□□ -0.12
RFX3P48380 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC14.31□□□□□ -0.12
RFX3P48380 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
RFX3P48380 DPY19L2P2-201ENST00000312132 4078 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
RFX3P48380 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
RFX3P48380 ZNF570-201ENST00000330173 5559 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
RFX3P48380 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
RFX3P48380 LINC01101-201ENST00000622953 1884 ntBASIC14.31□□□□□ -0.12
RFX3P48380 IMPACT-201ENST00000284202 3792 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
RFX3P48380 AL031595.1-201ENST00000623969 4709 ntBASIC14.31□□□□□ -0.12
RFX3P48380 PLXNB2-201ENST00000359337 6335 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
RFX3P48380 POR-201ENST00000394893 2532 ntTSL 5 BASIC14.31□□□□□ -0.12
RFX3P48380 SUCO-201ENST00000263688 5556 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 44.3 ms