Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 IFI35-204ENST00000438323 1232 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
BRCA1P38398 MFAP3-202ENST00000439768 1186 ntTSL 2 BASIC17.76■□□□□ 0.43
BRCA1P38398 AC138409.2-203ENST00000508395 553 ntTSL 4 BASIC17.76■□□□□ 0.43
BRCA1P38398 AC010285.2-201ENST00000510240 569 ntTSL 4 BASIC17.76■□□□□ 0.43
BRCA1P38398 WDYHV1-206ENST00000523356 869 ntTSL 3 BASIC17.76■□□□□ 0.43
BRCA1P38398 LINC01154-201ENST00000548617 454 ntTSL 3 BASIC17.76■□□□□ 0.43
BRCA1P38398 AC003006.1-202ENST00000594684 612 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
BRCA1P38398 Metazoa_SRP.157-201ENST00000622819 262 ntBASIC17.76■□□□□ 0.43
BRCA1P38398 IDH3A-224ENST00000629769 114 ntTSL 5 BASIC17.76■□□□□ 0.43
BRCA1P38398 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
BRCA1P38398 SARS2-202ENST00000430193 1886 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
BRCA1P38398 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
BRCA1P38398 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
BRCA1P38398 MKRN2-202ENST00000411987 1436 ntTSL 2 BASIC17.76■□□□□ 0.43
BRCA1P38398 FXYD3-208ENST00000604404 1322 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
BRCA1P38398 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
BRCA1P38398 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
BRCA1P38398 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
BRCA1P38398 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
BRCA1P38398 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
BRCA1P38398 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
BRCA1P38398 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC17.76■□□□□ 0.43
BRCA1P38398 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC17.76■□□□□ 0.43
BRCA1P38398 MYMK-201ENST00000339996 818 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
BRCA1P38398 SOD2-205ENST00000444946 917 ntTSL 2 BASIC17.75■□□□□ 0.43
BRCA1P38398 AC108462.1-201ENST00000457467 850 ntTSL 3 BASIC17.75■□□□□ 0.43
BRCA1P38398 AC023906.1-201ENST00000486386 453 ntBASIC17.75■□□□□ 0.43
BRCA1P38398 PFN2-212ENST00000490975 858 ntTSL 4 BASIC17.75■□□□□ 0.43
BRCA1P38398 ADM-203ENST00000525063 867 ntAPPRIS P1 TSL 3 BASIC17.75■□□□□ 0.43
BRCA1P38398 C11orf97-201ENST00000542198 701 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
BRCA1P38398 ANKRD20A21P-201ENST00000611282 517 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
BRCA1P38398 ANKRD36C-208ENST00000619511 737 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
BRCA1P38398 AC129778.1-201ENST00000623957 920 ntTSL 5 BASIC17.75■□□□□ 0.43
BRCA1P38398 LINC01002-234ENST00000633808 848 ntTSL 5 BASIC17.75■□□□□ 0.43
BRCA1P38398 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC17.75■□□□□ 0.43
BRCA1P38398 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC17.75■□□□□ 0.43
BRCA1P38398 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
BRCA1P38398 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC17.75■□□□□ 0.43
BRCA1P38398 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
BRCA1P38398 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC17.75■□□□□ 0.43
BRCA1P38398 AC067931.2-201ENST00000623655 2003 ntBASIC17.75■□□□□ 0.43
BRCA1P38398 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC17.75■□□□□ 0.43
BRCA1P38398 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC17.75■□□□□ 0.43
BRCA1P38398 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
BRCA1P38398 AC005906.2-205ENST00000640862 1522 ntTSL 5 BASIC17.75■□□□□ 0.43
BRCA1P38398 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
BRCA1P38398 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC17.75■□□□□ 0.43
BRCA1P38398 HIST1H4B-201ENST00000377745 438 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
BRCA1P38398 PEMT-204ENST00000395783 1008 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
BRCA1P38398 AC114812.1-201ENST00000421868 689 ntTSL 2 BASIC17.75■□□□□ 0.43
BRCA1P38398 MRPL43-211ENST00000477279 903 ntTSL 2 BASIC17.75■□□□□ 0.43
BRCA1P38398 AC132803.1-201ENST00000504204 493 ntTSL 2 BASIC17.75■□□□□ 0.43
BRCA1P38398 RBM4-211ENST00000530235 1011 ntTSL 3 BASIC17.75■□□□□ 0.43
BRCA1P38398 AC019294.2-203ENST00000569596 594 ntTSL 3 BASIC17.75■□□□□ 0.43
BRCA1P38398 PSMA6-215ENST00000622405 978 ntTSL 2 BASIC17.75■□□□□ 0.43
BRCA1P38398 PNPT1-207ENST00000625249 216 ntTSL 5 BASIC17.75■□□□□ 0.43
BRCA1P38398 SSR4P1-203ENST00000599569 2260 ntBASIC17.75■□□□□ 0.43
BRCA1P38398 AC117503.4-201ENST00000623229 1418 ntBASIC17.75■□□□□ 0.43
BRCA1P38398 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC17.75■□□□□ 0.43
BRCA1P38398 TSPAN3-205ENST00000558745 1340 ntTSL 5 BASIC17.75■□□□□ 0.43
BRCA1P38398 UQCC2-204ENST00000607484 1314 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
BRCA1P38398 ATAT1-206ENST00000376485 1476 ntAPPRIS ALT1 TSL 5 BASIC17.75■□□□□ 0.43
BRCA1P38398 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
BRCA1P38398 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
BRCA1P38398 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC17.75■□□□□ 0.43
BRCA1P38398 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
BRCA1P38398 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
BRCA1P38398 PSMG2-201ENST00000317615 1686 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
BRCA1P38398 ETNPPL-206ENST00000510706 1692 ntTSL 2 BASIC17.74■□□□□ 0.43
BRCA1P38398 COQ4-201ENST00000300452 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
BRCA1P38398 BTNL8-203ENST00000400707 1512 ntTSL 2 BASIC17.74■□□□□ 0.43
BRCA1P38398 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
BRCA1P38398 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
BRCA1P38398 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
BRCA1P38398 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
BRCA1P38398 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
BRCA1P38398 HNRNPA1-201ENST00000330752 1294 ntTSL 5 BASIC17.74■□□□□ 0.43
BRCA1P38398 LEMD1-205ENST00000367154 786 ntTSL 2 BASIC17.74■□□□□ 0.43
BRCA1P38398 KRT18P37-201ENST00000520711 1282 ntBASIC17.74■□□□□ 0.43
BRCA1P38398 KNOP1P1-201ENST00000542108 989 ntBASIC17.74■□□□□ 0.43
BRCA1P38398 ACSM5-206ENST00000575584 1130 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
BRCA1P38398 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC17.74■□□□□ 0.43
BRCA1P38398 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
BRCA1P38398 ZCCHC17-201ENST00000344147 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
BRCA1P38398 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
BRCA1P38398 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
BRCA1P38398 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
BRCA1P38398 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
BRCA1P38398 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC17.74■□□□□ 0.43
BRCA1P38398 METAP2-205ENST00000546753 1862 ntTSL 2 BASIC17.74■□□□□ 0.43
BRCA1P38398 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC17.74■□□□□ 0.43
BRCA1P38398 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
BRCA1P38398 ASGR1-209ENST00000619926 1384 ntTSL 5 BASIC17.74■□□□□ 0.43
BRCA1P38398 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
BRCA1P38398 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC17.74■□□□□ 0.43
BRCA1P38398 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC17.74■□□□□ 0.43
BRCA1P38398 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC17.73■□□□□ 0.43
BRCA1P38398 DYNLT1-201ENST00000367085 774 ntTSL 2 BASIC17.73■□□□□ 0.43
BRCA1P38398 EEF1DP5-201ENST00000431410 772 ntBASIC17.73■□□□□ 0.43
BRCA1P38398 RN7SL147P-201ENST00000487345 298 ntBASIC17.73■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 120.6 ms