Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 HLA-DRB5-201ENST00000374975 1260 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
SCN4AP35499 AL663074.1-201ENST00000436642 299 ntTSL 3 BASIC17.34■□□□□ 0.37
SCN4AP35499 FRMD4A-204ENST00000475141 1233 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
SCN4AP35499 ORAOV1-205ENST00000535657 709 ntAPPRIS P2 TSL 3 BASIC17.34■□□□□ 0.37
SCN4AP35499 KRT8P2-201ENST00000556193 944 ntBASIC17.34■□□□□ 0.37
SCN4AP35499 SNX11-210ENST00000582104 1282 ntTSL 2 BASIC17.34■□□□□ 0.37
SCN4AP35499 AP001269.2-201ENST00000590055 379 ntTSL 3 BASIC17.34■□□□□ 0.37
SCN4AP35499 AC020904.3-201ENST00000624199 442 ntBASIC17.34■□□□□ 0.37
SCN4AP35499 OSMR-AS1-204ENST00000636516 850 ntTSL 5 BASIC17.34■□□□□ 0.37
SCN4AP35499 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
SCN4AP35499 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC17.34■□□□□ 0.37
SCN4AP35499 GCK-209ENST00000616242 2260 ntTSL 5 BASIC17.34■□□□□ 0.37
SCN4AP35499 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
SCN4AP35499 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC17.34■□□□□ 0.37
SCN4AP35499 COL4A2-AS2-201ENST00000458403 1522 ntTSL 2 BASIC17.34■□□□□ 0.37
SCN4AP35499 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SCN4AP35499 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC17.33■□□□□ 0.37
SCN4AP35499 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC17.33■□□□□ 0.37
SCN4AP35499 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
SCN4AP35499 AC009093.10-201ENST00000641956 1442 ntBASIC17.33■□□□□ 0.37
SCN4AP35499 IGHV4-39-201ENST00000390619 425 ntAPPRIS P1 BASIC17.33■□□□□ 0.37
SCN4AP35499 AC112721.1-201ENST00000409162 588 ntTSL 3 BASIC17.33■□□□□ 0.37
SCN4AP35499 PPP1R2P4-201ENST00000424051 595 ntBASIC17.33■□□□□ 0.37
SCN4AP35499 NSD2-209ENST00000436793 835 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
SCN4AP35499 AL512622.1-202ENST00000443922 478 ntTSL 3 BASIC17.33■□□□□ 0.37
SCN4AP35499 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
SCN4AP35499 AC006529.1-201ENST00000459978 637 ntBASIC17.33■□□□□ 0.37
SCN4AP35499 TRBC2-201ENST00000466254 758 ntAPPRIS P1 BASIC17.33■□□□□ 0.37
SCN4AP35499 IGKV1D-43-201ENST00000468879 532 ntAPPRIS P1 BASIC17.33■□□□□ 0.37
SCN4AP35499 AC011383.1-201ENST00000517474 617 ntTSL 3 BASIC17.33■□□□□ 0.37
SCN4AP35499 LZTS1-AS1-201ENST00000523103 892 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
SCN4AP35499 CR392039.1-201ENST00000623217 204 ntBASIC17.33■□□□□ 0.37
SCN4AP35499 DNAJC10-211ENST00000640034 888 ntTSL 5 BASIC17.33■□□□□ 0.37
SCN4AP35499 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
SCN4AP35499 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.37
SCN4AP35499 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC17.33■□□□□ 0.36
SCN4AP35499 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC17.33■□□□□ 0.36
SCN4AP35499 AC010096.1-201ENST00000443897 1709 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
SCN4AP35499 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SCN4AP35499 WASH3P-207ENST00000560956 1394 ntBASIC17.33■□□□□ 0.36
SCN4AP35499 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
SCN4AP35499 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SCN4AP35499 VEGFA-201ENST00000230480 993 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
SCN4AP35499 GSTT2-201ENST00000402588 937 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
SCN4AP35499 SNX3-204ENST00000426155 1072 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
SCN4AP35499 GAS5-209ENST00000430245 723 ntTSL 3 BASIC17.33■□□□□ 0.36
SCN4AP35499 TAGLN3-203ENST00000455401 1164 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SCN4AP35499 LINC02063-201ENST00000503415 566 ntTSL 4 BASIC17.33■□□□□ 0.36
SCN4AP35499 IGHEP2-201ENST00000519308 1256 ntBASIC17.33■□□□□ 0.36
SCN4AP35499 FOXN3-AS2-201ENST00000554071 1262 ntBASIC17.33■□□□□ 0.36
SCN4AP35499 AC012174.1-201ENST00000562349 714 ntTSL 3 BASIC17.33■□□□□ 0.36
SCN4AP35499 AP005264.1-201ENST00000586226 733 ntTSL 3 BASIC17.33■□□□□ 0.36
SCN4AP35499 PGPEP1-203ENST00000595066 762 ntTSL 2 BASIC17.33■□□□□ 0.36
SCN4AP35499 AL133467.4-201ENST00000602953 725 ntBASIC17.33■□□□□ 0.36
SCN4AP35499 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SCN4AP35499 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SCN4AP35499 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SCN4AP35499 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SCN4AP35499 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC17.32■□□□□ 0.36
SCN4AP35499 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
SCN4AP35499 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC17.32■□□□□ 0.36
SCN4AP35499 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
SCN4AP35499 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SCN4AP35499 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SCN4AP35499 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
SCN4AP35499 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SCN4AP35499 CEP250-201ENST00000397524 1419 ntTSL 5 BASIC17.32■□□□□ 0.36
SCN4AP35499 AL591122.2-201ENST00000624125 1853 ntBASIC17.32■□□□□ 0.36
SCN4AP35499 LINC00963-203ENST00000423918 1654 ntTSL 2 BASIC17.32■□□□□ 0.36
SCN4AP35499 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
SCN4AP35499 OPRM1-201ENST00000229768 1465 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SCN4AP35499 OPRM1-207ENST00000428397 1481 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
SCN4AP35499 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SCN4AP35499 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
SCN4AP35499 AL391839.2-201ENST00000412085 383 ntTSL 5 BASIC17.32■□□□□ 0.36
SCN4AP35499 AP002856.2-201ENST00000416553 584 ntTSL 3 BASIC17.32■□□□□ 0.36
SCN4AP35499 AC108462.1-201ENST00000457467 850 ntTSL 3 BASIC17.32■□□□□ 0.36
SCN4AP35499 HNRNPA1P42-201ENST00000458678 957 ntBASIC17.32■□□□□ 0.36
SCN4AP35499 AL160191.2-201ENST00000603975 601 ntBASIC17.32■□□□□ 0.36
SCN4AP35499 ANKRD20A21P-201ENST00000611282 517 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SCN4AP35499 AC092364.2-201ENST00000596710 2692 ntBASIC17.32■□□□□ 0.36
SCN4AP35499 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SCN4AP35499 FRMD6-AS1-201ENST00000617151 2229 ntBASIC17.32■□□□□ 0.36
SCN4AP35499 AC005906.2-205ENST00000640862 1522 ntTSL 5 BASIC17.32■□□□□ 0.36
SCN4AP35499 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SCN4AP35499 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
SCN4AP35499 DLK1-201ENST00000331224 1324 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SCN4AP35499 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
SCN4AP35499 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SCN4AP35499 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC17.32■□□□□ 0.36
SCN4AP35499 MBD1-225ENST00000591535 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
SCN4AP35499 TMEM176B-204ENST00000447204 1430 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SCN4AP35499 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SCN4AP35499 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC17.31■□□□□ 0.36
SCN4AP35499 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
SCN4AP35499 UBL4B-201ENST00000334179 1478 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
SCN4AP35499 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
SCN4AP35499 TMEM9-202ENST00000367332 1544 ntAPPRIS ALT1 TSL 2 BASIC17.31■□□□□ 0.36
SCN4AP35499 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
SCN4AP35499 MRPL33-201ENST00000296102 518 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms