Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC11.62□□□□□ -0.55
HLA-DMBP28068 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC11.62□□□□□ -0.55
HLA-DMBP28068 AC241585.1-201ENST00000433527 519 ntBASIC11.62□□□□□ -0.55
HLA-DMBP28068 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC11.62□□□□□ -0.55
HLA-DMBP28068 KRT18P43-201ENST00000469825 1281 ntBASIC11.62□□□□□ -0.55
HLA-DMBP28068 HLA-V-204ENST00000476601 1289 ntBASIC11.62□□□□□ -0.55
HLA-DMBP28068 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC11.62□□□□□ -0.55
HLA-DMBP28068 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC11.62□□□□□ -0.55
HLA-DMBP28068 AC044860.1-202ENST00000559481 777 ntBASIC11.62□□□□□ -0.55
HLA-DMBP28068 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC11.62□□□□□ -0.55
HLA-DMBP28068 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC11.62□□□□□ -0.55
HLA-DMBP28068 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC11.62□□□□□ -0.55
HLA-DMBP28068 AC074044.1-201ENST00000609673 707 ntBASIC11.62□□□□□ -0.55
HLA-DMBP28068 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC11.62□□□□□ -0.55
HLA-DMBP28068 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC11.62□□□□□ -0.55
HLA-DMBP28068 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
HLA-DMBP28068 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
HLA-DMBP28068 YME1L1-202ENST00000375972 2517 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
HLA-DMBP28068 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC11.62□□□□□ -0.55
HLA-DMBP28068 GPRC5C-202ENST00000392627 2988 ntAPPRIS P3 TSL 1 (best) BASIC11.62□□□□□ -0.55
HLA-DMBP28068 TIE1-201ENST00000372476 3882 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
HLA-DMBP28068 MIRLET7BHG-203ENST00000435439 2264 ntTSL 2 BASIC11.62□□□□□ -0.55
HLA-DMBP28068 ZBTB45P1-201ENST00000452761 1456 ntBASIC11.62□□□□□ -0.55
HLA-DMBP28068 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC11.62□□□□□ -0.55
HLA-DMBP28068 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
HLA-DMBP28068 XRCC1-201ENST00000262887 2802 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
HLA-DMBP28068 MAP3K11-208ENST00000530153 2830 ntTSL 2 BASIC11.62□□□□□ -0.55
HLA-DMBP28068 PKIA-202ENST00000396418 4163 ntAPPRIS P1 TSL 2 BASIC11.62□□□□□ -0.55
HLA-DMBP28068 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC11.62□□□□□ -0.55
HLA-DMBP28068 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC11.62□□□□□ -0.55
HLA-DMBP28068 SCUBE1-202ENST00000360835 9808 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
HLA-DMBP28068 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
HLA-DMBP28068 LTBP3-221ENST00000532932 3327 ntTSL 2 BASIC11.62□□□□□ -0.55
HLA-DMBP28068 NUP210-201ENST00000254508 7193 ntAPPRIS P1 TSL 2 BASIC11.61□□□□□ -0.55
HLA-DMBP28068 PRSS8-201ENST00000317508 1872 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
HLA-DMBP28068 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
HLA-DMBP28068 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC11.61□□□□□ -0.55
HLA-DMBP28068 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
HLA-DMBP28068 AAK1-202ENST00000409068 2606 ntTSL 2 BASIC11.61□□□□□ -0.55
HLA-DMBP28068 HAP1-204ENST00000393939 5683 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
HLA-DMBP28068 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC11.61□□□□□ -0.55
HLA-DMBP28068 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
HLA-DMBP28068 AUTS2-217ENST00000611706 4583 ntTSL 5 BASIC11.61□□□□□ -0.55
HLA-DMBP28068 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
HLA-DMBP28068 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC11.61□□□□□ -0.55
HLA-DMBP28068 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC11.61□□□□□ -0.55
HLA-DMBP28068 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC11.61□□□□□ -0.55
HLA-DMBP28068 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC11.61□□□□□ -0.55
HLA-DMBP28068 KCNMA1-202ENST00000286628 6233 ntAPPRIS ALT2 TSL 1 (best) BASIC11.61□□□□□ -0.55
HLA-DMBP28068 NCKAP5L-201ENST00000335999 4900 ntAPPRIS P1 TSL 5 BASIC11.61□□□□□ -0.55
HLA-DMBP28068 CEP131-208ENST00000575907 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC11.61□□□□□ -0.55
HLA-DMBP28068 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC11.61□□□□□ -0.55
HLA-DMBP28068 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC11.61□□□□□ -0.55
HLA-DMBP28068 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC11.61□□□□□ -0.55
HLA-DMBP28068 AC092580.3-201ENST00000430932 139 ntBASIC11.61□□□□□ -0.55
HLA-DMBP28068 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC11.61□□□□□ -0.55
HLA-DMBP28068 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC11.61□□□□□ -0.55
HLA-DMBP28068 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC11.61□□□□□ -0.55
HLA-DMBP28068 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC11.61□□□□□ -0.55
HLA-DMBP28068 LHX6-205ENST00000464484 666 ntTSL 2 BASIC11.61□□□□□ -0.55
HLA-DMBP28068 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC11.61□□□□□ -0.55
HLA-DMBP28068 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC11.61□□□□□ -0.55
HLA-DMBP28068 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC11.61□□□□□ -0.55
HLA-DMBP28068 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC11.61□□□□□ -0.55
HLA-DMBP28068 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC11.61□□□□□ -0.55
HLA-DMBP28068 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC11.61□□□□□ -0.55
HLA-DMBP28068 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC11.61□□□□□ -0.55
HLA-DMBP28068 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
HLA-DMBP28068 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
HLA-DMBP28068 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC11.61□□□□□ -0.55
HLA-DMBP28068 TRIM67-201ENST00000366653 3936 ntAPPRIS P2 TSL 1 (best) BASIC11.61□□□□□ -0.55
HLA-DMBP28068 NFATC4-221ENST00000555453 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC11.61□□□□□ -0.55
HLA-DMBP28068 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
HLA-DMBP28068 AP002990.1-202ENST00000496634 5064 ntAPPRIS P1 TSL 2 BASIC11.61□□□□□ -0.55
HLA-DMBP28068 AC104836.1-202ENST00000636805 6041 ntAPPRIS P1 TSL 5 BASIC11.61□□□□□ -0.55
HLA-DMBP28068 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC11.61□□□□□ -0.55
HLA-DMBP28068 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
HLA-DMBP28068 CYP2AB1P-202ENST00000454440 1456 ntBASIC11.61□□□□□ -0.55
HLA-DMBP28068 AC012508.2-201ENST00000567613 1472 ntBASIC11.61□□□□□ -0.55
HLA-DMBP28068 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
HLA-DMBP28068 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC11.61□□□□□ -0.55
HLA-DMBP28068 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC11.61□□□□□ -0.55
HLA-DMBP28068 AC090099.1-203ENST00000527059 2945 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
HLA-DMBP28068 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
HLA-DMBP28068 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
HLA-DMBP28068 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC11.61□□□□□ -0.55
HLA-DMBP28068 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
HLA-DMBP28068 LINC01010-201ENST00000431422 2069 ntTSL 2 BASIC11.61□□□□□ -0.55
HLA-DMBP28068 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC11.61□□□□□ -0.55
HLA-DMBP28068 MEF2D-201ENST00000348159 5965 ntAPPRIS P3 TSL 1 (best) BASIC11.61□□□□□ -0.55
HLA-DMBP28068 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC11.61□□□□□ -0.55
HLA-DMBP28068 EDIL3-201ENST00000296591 4727 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
HLA-DMBP28068 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
HLA-DMBP28068 MAGIX-208ENST00000616266 3295 ntAPPRIS ALT2 TSL 5 BASIC11.61□□□□□ -0.55
HLA-DMBP28068 CMTM6-201ENST00000205636 3863 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
HLA-DMBP28068 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC11.6□□□□□ -0.55
HLA-DMBP28068 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC11.6□□□□□ -0.55
HLA-DMBP28068 LHFPL4-201ENST00000287585 4880 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
HLA-DMBP28068 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
HLA-DMBP28068 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC11.6□□□□□ -0.55
Retrieved 100 of 98,524 protein–RNA pairs in 42.1 ms