Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
COL5A3P25940 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
COL5A3P25940 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
COL5A3P25940 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
COL5A3P25940 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
COL5A3P25940 GSN-206ENST00000394353 2311 ntTSL 2 BASIC18.45■□□□□ 0.54
COL5A3P25940 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
COL5A3P25940 CICP23-201ENST00000605013 2741 ntBASIC18.45■□□□□ 0.54
COL5A3P25940 C7orf61-201ENST00000332375 1004 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
COL5A3P25940 LCE3B-201ENST00000335633 288 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
COL5A3P25940 S100A3-202ENST00000368713 856 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
COL5A3P25940 CYB561D1-203ENST00000393709 620 ntAPPRIS ALT1 TSL 4 BASIC18.45■□□□□ 0.54
COL5A3P25940 GSTT2B-202ENST00000404172 819 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
COL5A3P25940 CNRIP1-202ENST00000409559 644 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
COL5A3P25940 RBM14-204ENST00000409738 372 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
COL5A3P25940 AC004973.1-201ENST00000413240 635 ntTSL 3 BASIC18.45■□□□□ 0.54
COL5A3P25940 AC108734.2-201ENST00000420887 1069 ntBASIC18.45■□□□□ 0.54
COL5A3P25940 PPP1R2P4-201ENST00000424051 595 ntBASIC18.45■□□□□ 0.54
COL5A3P25940 SOX2-OT-208ENST00000477928 902 ntTSL 2 BASIC18.45■□□□□ 0.54
COL5A3P25940 RN7SL530P-201ENST00000485097 298 ntBASIC18.45■□□□□ 0.54
COL5A3P25940 LINC02228-201ENST00000507600 534 ntTSL 2 BASIC18.45■□□□□ 0.54
COL5A3P25940 AC068867.1-201ENST00000559855 150 ntBASIC18.45■□□□□ 0.54
COL5A3P25940 AC134312.2-201ENST00000563521 608 ntTSL 2 BASIC18.45■□□□□ 0.54
COL5A3P25940 GLUD1P2-203ENST00000631118 486 ntTSL 3 BASIC18.45■□□□□ 0.54
COL5A3P25940 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
COL5A3P25940 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC18.45■□□□□ 0.54
COL5A3P25940 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
COL5A3P25940 PGAP2-227ENST00000496834 1530 ntTSL 2 BASIC18.45■□□□□ 0.54
COL5A3P25940 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
COL5A3P25940 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
COL5A3P25940 FDFT1-223ENST00000615631 2462 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
COL5A3P25940 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
COL5A3P25940 AC006504.5-208ENST00000588784 2401 ntBASIC18.44■□□□□ 0.54
COL5A3P25940 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC18.44■□□□□ 0.54
COL5A3P25940 AC010096.1-201ENST00000443897 1709 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
COL5A3P25940 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
COL5A3P25940 AL358216.1-201ENST00000451601 1657 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
COL5A3P25940 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC18.44■□□□□ 0.54
COL5A3P25940 ING4-207ENST00000446105 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC18.44■□□□□ 0.54
COL5A3P25940 ACE3P-201ENST00000423435 1973 ntBASIC18.44■□□□□ 0.54
COL5A3P25940 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
COL5A3P25940 SPATA8-201ENST00000328504 1083 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
COL5A3P25940 HCG9-201ENST00000376800 663 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
COL5A3P25940 BCAS2P2-201ENST00000425064 674 ntBASIC18.44■□□□□ 0.54
COL5A3P25940 LINC02557-201ENST00000432249 477 ntTSL 3 BASIC18.44■□□□□ 0.54
COL5A3P25940 AL355803.1-201ENST00000455524 188 ntTSL 2 BASIC18.44■□□□□ 0.54
COL5A3P25940 MUTYH-231ENST00000488731 740 ntTSL 5 BASIC18.44■□□□□ 0.54
COL5A3P25940 AC132803.1-201ENST00000504204 493 ntTSL 2 BASIC18.44■□□□□ 0.54
COL5A3P25940 IGHV1-12-201ENST00000518307 205 ntBASIC18.44■□□□□ 0.54
COL5A3P25940 SNRPA1-216ENST00000626000 539 ntTSL 5 BASIC18.44■□□□□ 0.54
COL5A3P25940 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
COL5A3P25940 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
COL5A3P25940 C3orf52-202ENST00000431717 2054 ntAPPRIS ALT2 TSL 2 BASIC18.44■□□□□ 0.54
COL5A3P25940 AC021683.1-201ENST00000585798 1767 ntTSL 5 BASIC18.44■□□□□ 0.54
COL5A3P25940 AC025183.3-201ENST00000623526 1482 ntBASIC18.44■□□□□ 0.54
COL5A3P25940 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC18.44■□□□□ 0.54
COL5A3P25940 MAGEA2-203ENST00000611557 2024 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
COL5A3P25940 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
COL5A3P25940 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC18.44■□□□□ 0.54
COL5A3P25940 GNAO1-205ENST00000563661 1351 ntTSL 2 BASIC18.44■□□□□ 0.54
COL5A3P25940 LINC02021-201ENST00000504808 1608 ntTSL 3 BASIC18.44■□□□□ 0.54
COL5A3P25940 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
COL5A3P25940 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
COL5A3P25940 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
COL5A3P25940 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
COL5A3P25940 TMSB15A-201ENST00000289373 685 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
COL5A3P25940 COX20P1-201ENST00000366529 357 ntBASIC18.43■□□□□ 0.54
COL5A3P25940 HOXB-AS3-206ENST00000474040 741 ntTSL 3 BASIC18.43■□□□□ 0.54
COL5A3P25940 AC093909.3-201ENST00000504783 336 ntBASIC18.43■□□□□ 0.54
COL5A3P25940 LINC01485-202ENST00000520324 566 ntTSL 4 BASIC18.43■□□□□ 0.54
COL5A3P25940 NME1-NME2-203ENST00000555572 1193 ntAPPRIS ALT2 TSL 2 BASIC18.43■□□□□ 0.54
COL5A3P25940 AC007376.2-201ENST00000556271 540 ntTSL 3 BASIC18.43■□□□□ 0.54
COL5A3P25940 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
COL5A3P25940 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC18.43■□□□□ 0.54
COL5A3P25940 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
COL5A3P25940 LINC00528-201ENST00000600723 2160 ntBASIC18.43■□□□□ 0.54
COL5A3P25940 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
COL5A3P25940 LIPE-AS1-204ENST00000594624 1448 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
COL5A3P25940 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
COL5A3P25940 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC18.43■□□□□ 0.54
COL5A3P25940 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC18.43■□□□□ 0.54
COL5A3P25940 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
COL5A3P25940 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
COL5A3P25940 LTB4R2-202ENST00000528054 3092 ntBASIC18.43■□□□□ 0.54
COL5A3P25940 PAX7-202ENST00000400661 1700 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
COL5A3P25940 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC18.43■□□□□ 0.54
COL5A3P25940 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC18.43■□□□□ 0.54
COL5A3P25940 FAM3B-201ENST00000357985 1088 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
COL5A3P25940 MAPK13-202ENST00000373759 1036 ntTSL 5 BASIC18.43■□□□□ 0.54
COL5A3P25940 PPM1N-205ENST00000401705 771 ntTSL 3 BASIC18.43■□□□□ 0.54
COL5A3P25940 MFAP3-202ENST00000439768 1186 ntTSL 2 BASIC18.43■□□□□ 0.54
COL5A3P25940 AL392046.1-202ENST00000457255 521 ntTSL 5 BASIC18.43■□□□□ 0.54
COL5A3P25940 RPL18AP8-201ENST00000486071 528 ntBASIC18.43■□□□□ 0.54
COL5A3P25940 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC18.43■□□□□ 0.54
COL5A3P25940 AL136040.2-201ENST00000618431 1130 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
COL5A3P25940 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
COL5A3P25940 UBL4B-201ENST00000334179 1478 ntAPPRIS P1 BASIC18.43■□□□□ 0.54
COL5A3P25940 ZNF576-202ENST00000391965 1468 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
COL5A3P25940 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC18.43■□□□□ 0.54
COL5A3P25940 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 60.8 ms