Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC17.86■□□□□ 0.45
HMGB1P09429 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC17.86■□□□□ 0.45
HMGB1P09429 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
HMGB1P09429 DUOX1-201ENST00000321429 5738 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HMGB1P09429 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HMGB1P09429 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HMGB1P09429 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HMGB1P09429 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HMGB1P09429 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
HMGB1P09429 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC17.86■□□□□ 0.45
HMGB1P09429 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
HMGB1P09429 ACTG1P3-201ENST00000431775 1114 ntBASIC17.86■□□□□ 0.45
HMGB1P09429 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC17.86■□□□□ 0.45
HMGB1P09429 AC026434.2-201ENST00000506094 1078 ntBASIC17.86■□□□□ 0.45
HMGB1P09429 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC17.86■□□□□ 0.45
HMGB1P09429 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC17.86■□□□□ 0.45
HMGB1P09429 AC027307.3-201ENST00000594262 1100 ntBASIC17.86■□□□□ 0.45
HMGB1P09429 KRT8P35-201ENST00000483942 1338 ntBASIC17.86■□□□□ 0.45
HMGB1P09429 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC17.86■□□□□ 0.45
HMGB1P09429 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HMGB1P09429 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HMGB1P09429 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC17.86■□□□□ 0.45
HMGB1P09429 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HMGB1P09429 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC17.86■□□□□ 0.45
HMGB1P09429 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC17.86■□□□□ 0.45
HMGB1P09429 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
HMGB1P09429 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
HMGB1P09429 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC17.86■□□□□ 0.45
HMGB1P09429 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HMGB1P09429 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
HMGB1P09429 AC140479.7-201ENST00000636301 2332 ntBASIC17.86■□□□□ 0.45
HMGB1P09429 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
HMGB1P09429 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
HMGB1P09429 LTBP2-201ENST00000261978 8567 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
HMGB1P09429 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
HMGB1P09429 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
HMGB1P09429 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
HMGB1P09429 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
HMGB1P09429 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
HMGB1P09429 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
HMGB1P09429 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC17.85■□□□□ 0.45
HMGB1P09429 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
HMGB1P09429 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
HMGB1P09429 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
HMGB1P09429 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC17.85■□□□□ 0.45
HMGB1P09429 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC17.85■□□□□ 0.45
HMGB1P09429 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
HMGB1P09429 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC17.85■□□□□ 0.45
HMGB1P09429 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
HMGB1P09429 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC17.85■□□□□ 0.45
HMGB1P09429 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
HMGB1P09429 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
HMGB1P09429 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC17.85■□□□□ 0.45
HMGB1P09429 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC17.85■□□□□ 0.45
HMGB1P09429 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC17.85■□□□□ 0.45
HMGB1P09429 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC17.85■□□□□ 0.45
HMGB1P09429 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC17.85■□□□□ 0.45
HMGB1P09429 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
HMGB1P09429 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC17.85■□□□□ 0.45
HMGB1P09429 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC17.85■□□□□ 0.45
HMGB1P09429 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC17.85■□□□□ 0.45
HMGB1P09429 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
HMGB1P09429 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
HMGB1P09429 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
HMGB1P09429 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
HMGB1P09429 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC17.84■□□□□ 0.45
HMGB1P09429 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC17.84■□□□□ 0.45
HMGB1P09429 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC17.84■□□□□ 0.45
HMGB1P09429 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
HMGB1P09429 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
HMGB1P09429 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC17.84■□□□□ 0.45
HMGB1P09429 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
HMGB1P09429 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC17.84■□□□□ 0.45
HMGB1P09429 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC17.84■□□□□ 0.45
HMGB1P09429 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
HMGB1P09429 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC17.84■□□□□ 0.45
HMGB1P09429 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
HMGB1P09429 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
HMGB1P09429 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
HMGB1P09429 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
HMGB1P09429 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
HMGB1P09429 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
HMGB1P09429 AC098614.1-201ENST00000368528 745 ntBASIC17.84■□□□□ 0.45
HMGB1P09429 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
HMGB1P09429 TLE1P1-201ENST00000422965 589 ntBASIC17.84■□□□□ 0.45
HMGB1P09429 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC17.84■□□□□ 0.45
HMGB1P09429 NEU3-203ENST00000529024 581 ntTSL 3 BASIC17.84■□□□□ 0.45
HMGB1P09429 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
HMGB1P09429 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC17.84■□□□□ 0.45
HMGB1P09429 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
HMGB1P09429 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
HMGB1P09429 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
HMGB1P09429 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC17.84■□□□□ 0.45
HMGB1P09429 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
HMGB1P09429 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC17.84■□□□□ 0.45
HMGB1P09429 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC17.84■□□□□ 0.45
HMGB1P09429 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
HMGB1P09429 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
HMGB1P09429 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
HMGB1P09429 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms