Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC15.3■□□□□ 0.04
VIMP08670 IGLL3P-201ENST00000412472 434 ntBASIC15.3■□□□□ 0.04
VIMP08670 CYTH2-203ENST00000427476 4606 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
VIMP08670 MAN2B1-203ENST00000456935 3184 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
VIMP08670 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC15.3■□□□□ 0.04
VIMP08670 GOLGA8VP-201ENST00000559009 1798 ntBASIC15.3■□□□□ 0.04
VIMP08670 AC012640.2-201ENST00000561606 901 ntBASIC15.3■□□□□ 0.04
VIMP08670 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC15.3■□□□□ 0.04
VIMP08670 AC073389.1-201ENST00000595595 795 ntBASIC15.3■□□□□ 0.04
VIMP08670 REXO1L4P-201ENST00000605109 1937 ntBASIC15.3■□□□□ 0.04
VIMP08670 PFAS-201ENST00000314666 5371 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
VIMP08670 NFKB1-201ENST00000226574 4085 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
VIMP08670 UBE2D3-210ENST00000453744 3990 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
VIMP08670 SOAT1-204ENST00000540564 6861 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
VIMP08670 PPP6R2-203ENST00000395741 3304 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
VIMP08670 PCMTD2-204ENST00000369758 3212 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
VIMP08670 SCD5-202ENST00000319540 3101 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
VIMP08670 LINC01782-201ENST00000591212 2908 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
VIMP08670 AC020915.4-201ENST00000597230 2708 ntTSL 2 BASIC15.3■□□□□ 0.04
VIMP08670 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
VIMP08670 FDFT1-223ENST00000615631 2462 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
VIMP08670 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC15.29■□□□□ 0.04
VIMP08670 SLC35E2B-205ENST00000617444 6283 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
VIMP08670 AL357054.3-201ENST00000607084 2055 ntTSL 5 BASIC15.29■□□□□ 0.04
VIMP08670 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC15.29■□□□□ 0.04
VIMP08670 LINC02346-201ENST00000383019 1967 ntTSL 2 BASIC15.29■□□□□ 0.04
VIMP08670 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
VIMP08670 GRIN1-204ENST00000371553 3751 ntAPPRIS P4 TSL 1 (best) BASIC15.29■□□□□ 0.04
VIMP08670 SGTB-201ENST00000381007 5469 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
VIMP08670 AC093668.2-201ENST00000481893 3569 ntTSL 2 BASIC15.29■□□□□ 0.04
VIMP08670 AC105052.1-201ENST00000519541 3569 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
VIMP08670 GDF9-201ENST00000296875 1796 ntTSL 5 BASIC15.29■□□□□ 0.04
VIMP08670 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
VIMP08670 AL023775.1-201ENST00000454907 1746 ntBASIC15.29■□□□□ 0.04
VIMP08670 ANKMY1-208ENST00000405002 3304 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
VIMP08670 ISY1-RAB43-201ENST00000418265 4868 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
VIMP08670 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC15.29■□□□□ 0.04
VIMP08670 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
VIMP08670 CATSPERE-201ENST00000366531 3038 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
VIMP08670 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
VIMP08670 AC026790.1-201ENST00000399760 2941 ntTSL 2 BASIC15.29■□□□□ 0.04
VIMP08670 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
VIMP08670 PPP2R5E-201ENST00000337537 6659 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
VIMP08670 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
VIMP08670 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
VIMP08670 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
VIMP08670 METTL26-205ENST00000397666 726 ntTSL 2 BASIC15.29■□□□□ 0.04
VIMP08670 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
VIMP08670 VN2R19P-201ENST00000442399 1052 ntBASIC15.29■□□□□ 0.04
VIMP08670 AC108751.1-201ENST00000490852 363 ntBASIC15.29■□□□□ 0.04
VIMP08670 RNPS1P1-201ENST00000507437 918 ntBASIC15.29■□□□□ 0.04
VIMP08670 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC15.29■□□□□ 0.04
VIMP08670 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
VIMP08670 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
VIMP08670 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC15.29■□□□□ 0.04
VIMP08670 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC15.29■□□□□ 0.04
VIMP08670 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC15.29■□□□□ 0.04
VIMP08670 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC15.29■□□□□ 0.04
VIMP08670 AL161645.1-201ENST00000622716 1255 ntBASIC15.29■□□□□ 0.04
VIMP08670 HPCAL4-201ENST00000372844 4856 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
VIMP08670 MARK4-201ENST00000262891 3573 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
VIMP08670 HSPH1-202ENST00000380405 3480 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
VIMP08670 R3HDM2-204ENST00000402412 4372 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
VIMP08670 CPA5-205ENST00000466363 2099 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
VIMP08670 EMILIN1-201ENST00000380320 3943 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
VIMP08670 NDNF-201ENST00000379692 2885 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
VIMP08670 CAP2-209ENST00000616440 2776 ntTSL 2 BASIC15.29■□□□□ 0.04
VIMP08670 P2RX3-201ENST00000263314 1831 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
VIMP08670 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC15.29■□□□□ 0.04
VIMP08670 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC15.29■□□□□ 0.04
VIMP08670 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
VIMP08670 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC15.29■□□□□ 0.04
VIMP08670 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC15.29■□□□□ 0.04
VIMP08670 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC15.29■□□□□ 0.04
VIMP08670 ILDR1-205ENST00000462014 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
VIMP08670 ZFP2-201ENST00000361362 2429 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
VIMP08670 FOXO1B-201ENST00000504678 1527 ntBASIC15.28■□□□□ 0.04
VIMP08670 RGS8-204ENST00000483095 1432 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
VIMP08670 TP73-201ENST00000346387 4854 ntTSL 5 BASIC15.28■□□□□ 0.04
VIMP08670 TICRR-201ENST00000268138 6775 ntAPPRIS P3 TSL 5 BASIC15.28■□□□□ 0.04
VIMP08670 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC15.28■□□□□ 0.04
VIMP08670 DISC1-221ENST00000620189 6689 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
VIMP08670 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
VIMP08670 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
VIMP08670 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
VIMP08670 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC15.28■□□□□ 0.04
VIMP08670 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC15.28■□□□□ 0.04
VIMP08670 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC15.28■□□□□ 0.04
VIMP08670 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC15.28■□□□□ 0.04
VIMP08670 AC105233.2-201ENST00000523697 349 ntBASIC15.28■□□□□ 0.04
VIMP08670 AF228730.5-201ENST00000530288 346 ntBASIC15.28■□□□□ 0.04
VIMP08670 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC15.28■□□□□ 0.04
VIMP08670 CD63-210ENST00000550776 870 ntTSL 5 BASIC15.28■□□□□ 0.04
VIMP08670 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC15.28■□□□□ 0.04
VIMP08670 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC15.28■□□□□ 0.04
VIMP08670 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC15.28■□□□□ 0.04
VIMP08670 ITGB8-201ENST00000222573 8751 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
VIMP08670 C8orf31-201ENST00000395172 1875 ntTSL 2 BASIC15.28■□□□□ 0.04
VIMP08670 SLC6A6P1-201ENST00000413933 1850 ntBASIC15.28■□□□□ 0.04
VIMP08670 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 43.1 ms