Protein–RNA interactions for Protein: P06400

RB1, Retinoblastoma-associated protein, humanhuman

Predictions only

Length 928 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RB1P06400 UBE4B-203ENST00000377153 1273 ntTSL 3 BASIC15.86■□□□□ 0.13
RB1P06400 CIDEC-202ENST00000383817 1199 ntAPPRIS ALT1 TSL 1 (best) BASIC15.86■□□□□ 0.13
RB1P06400 NME2-201ENST00000393183 568 ntTSL 2 BASIC15.86■□□□□ 0.13
RB1P06400 AC098934.1-204ENST00000430114 631 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
RB1P06400 LINC00431-201ENST00000440735 1189 ntTSL 5 BASIC15.86■□□□□ 0.13
RB1P06400 AC068134.1-201ENST00000441266 481 ntTSL 3 BASIC15.86■□□□□ 0.13
RB1P06400 UBXN7-AS1-201ENST00000442941 386 ntTSL 3 BASIC15.86■□□□□ 0.13
RB1P06400 AL035414.1-201ENST00000451327 857 ntBASIC15.86■□□□□ 0.13
RB1P06400 BUD31-205ENST00000456893 512 ntTSL 5 BASIC15.86■□□□□ 0.13
RB1P06400 TGIF1-218ENST00000551402 1089 ntTSL 2 BASIC15.86■□□□□ 0.13
RB1P06400 AC145207.3-201ENST00000576784 529 ntTSL 5 BASIC15.86■□□□□ 0.13
RB1P06400 FAM104A-206ENST00000583024 417 ntTSL 3 BASIC15.86■□□□□ 0.13
RB1P06400 FBXL12-202ENST00000585379 956 ntTSL 2 BASIC15.86■□□□□ 0.13
RB1P06400 GMFG-209ENST00000600322 622 ntTSL 5 BASIC15.86■□□□□ 0.13
RB1P06400 BX088702.1-201ENST00000610784 235 ntBASIC15.86■□□□□ 0.13
RB1P06400 GHRHR-212ENST00000611037 923 ntTSL 5 BASIC15.86■□□□□ 0.13
RB1P06400 MIR6842-201ENST00000612539 65 ntBASIC15.86■□□□□ 0.13
RB1P06400 LINC01783-202ENST00000614408 828 ntBASIC15.86■□□□□ 0.13
RB1P06400 BX284668.2-205ENST00000619677 828 ntBASIC15.86■□□□□ 0.13
RB1P06400 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
RB1P06400 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
RB1P06400 CES3-203ENST00000543856 3178 ntTSL 2 BASIC15.86■□□□□ 0.13
RB1P06400 UPK3BL1-201ENST00000340457 1342 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
RB1P06400 FRMPD2B-201ENST00000431305 1347 ntBASIC15.86■□□□□ 0.13
RB1P06400 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
RB1P06400 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC15.86■□□□□ 0.13
RB1P06400 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC15.86■□□□□ 0.13
RB1P06400 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
RB1P06400 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
RB1P06400 LINC00334-203ENST00000638500 1377 ntTSL 5 BASIC15.86■□□□□ 0.13
RB1P06400 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC15.86■□□□□ 0.13
RB1P06400 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC15.86■□□□□ 0.13
RB1P06400 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC15.86■□□□□ 0.13
RB1P06400 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
RB1P06400 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
RB1P06400 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC15.85■□□□□ 0.13
RB1P06400 SVOPL-201ENST00000288513 1413 ntTSL 2 BASIC15.85■□□□□ 0.13
RB1P06400 FAM151A-202ENST00000371304 1444 ntAPPRIS ALT2 TSL 5 BASIC15.85■□□□□ 0.13
RB1P06400 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
RB1P06400 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
RB1P06400 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC15.85■□□□□ 0.13
RB1P06400 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC15.85■□□□□ 0.13
RB1P06400 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
RB1P06400 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC15.85■□□□□ 0.13
RB1P06400 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
RB1P06400 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
RB1P06400 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC15.85■□□□□ 0.13
RB1P06400 MSR1-201ENST00000262101 2132 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
RB1P06400 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC15.85■□□□□ 0.13
RB1P06400 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
RB1P06400 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
RB1P06400 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
RB1P06400 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC15.85■□□□□ 0.13
RB1P06400 SLC35G2-201ENST00000393079 1577 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
RB1P06400 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
RB1P06400 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
RB1P06400 CNR1-201ENST00000362094 1252 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
RB1P06400 AP000356.3-201ENST00000382243 753 ntBASIC15.85■□□□□ 0.13
RB1P06400 AL139339.1-201ENST00000411906 657 ntTSL 2 BASIC15.85■□□□□ 0.13
RB1P06400 AL672291.1-201ENST00000417047 462 ntTSL 3 BASIC15.85■□□□□ 0.13
RB1P06400 BX284668.5-201ENST00000422124 406 ntTSL 2 BASIC15.85■□□□□ 0.13
RB1P06400 AL157407.1-201ENST00000435784 904 ntBASIC15.85■□□□□ 0.13
RB1P06400 CSHL1-205ENST00000438387 566 ntTSL 5 BASIC15.85■□□□□ 0.13
RB1P06400 SOX9-AS1-207ENST00000446332 443 ntTSL 2 BASIC15.85■□□□□ 0.13
RB1P06400 AC079112.1-201ENST00000454972 939 ntBASIC15.85■□□□□ 0.13
RB1P06400 MDH2-205ENST00000461263 648 ntTSL 2 BASIC15.85■□□□□ 0.13
RB1P06400 MYLK-AS1-202ENST00000470449 760 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
RB1P06400 LINC00461-207ENST00000506978 564 ntTSL 5 BASIC15.85■□□□□ 0.13
RB1P06400 AL845331.2-201ENST00000561882 1044 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
RB1P06400 LINC01584-201ENST00000562495 676 ntTSL 5 BASIC15.85■□□□□ 0.13
RB1P06400 RPL19-207ENST00000582193 792 ntAPPRIS ALT1 TSL 5 BASIC15.85■□□□□ 0.13
RB1P06400 AL109837.1-201ENST00000603272 613 ntBASIC15.85■□□□□ 0.13
RB1P06400 AL157813.1-201ENST00000612996 587 ntBASIC15.85■□□□□ 0.13
RB1P06400 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC15.85■□□□□ 0.13
RB1P06400 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
RB1P06400 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
RB1P06400 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
RB1P06400 UBL7-201ENST00000361351 1360 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
RB1P06400 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
RB1P06400 ZCCHC17-204ENST00000546109 1705 ntTSL 2 BASIC15.85■□□□□ 0.13
RB1P06400 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC15.85■□□□□ 0.13
RB1P06400 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC15.85■□□□□ 0.13
RB1P06400 OGFRL1-201ENST00000370435 8391 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
RB1P06400 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
RB1P06400 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
RB1P06400 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC15.84■□□□□ 0.13
RB1P06400 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
RB1P06400 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
RB1P06400 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC15.84■□□□□ 0.13
RB1P06400 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
RB1P06400 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC15.84■□□□□ 0.13
RB1P06400 SERF2-201ENST00000249786 1537 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
RB1P06400 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
RB1P06400 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
RB1P06400 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC15.84■□□□□ 0.13
RB1P06400 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
RB1P06400 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC15.84■□□□□ 0.13
RB1P06400 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC15.84■□□□□ 0.13
RB1P06400 CRYBB1-201ENST00000215939 1102 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
RB1P06400 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms