Protein–RNA interactions for Protein: P02549

SPTA1, Spectrin alpha chain, erythrocytic 1, humanhuman

Predictions only

Length 2,419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1P02549 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC13.68□□□□□ -0.22
SPTA1P02549 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC13.68□□□□□ -0.22
SPTA1P02549 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC13.68□□□□□ -0.22
SPTA1P02549 PLA1A-205ENST00000494440 1775 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
SPTA1P02549 AC108199.1-201ENST00000504249 508 ntTSL 3 BASIC13.68□□□□□ -0.22
SPTA1P02549 ALG1L6P-201ENST00000515248 758 ntBASIC13.68□□□□□ -0.22
SPTA1P02549 AC104561.3-201ENST00000518590 715 ntTSL 5 BASIC13.68□□□□□ -0.22
SPTA1P02549 PCDHA3-202ENST00000532566 4594 ntBASIC13.68□□□□□ -0.22
SPTA1P02549 AC093330.1-206ENST00000582546 812 ntTSL 3 BASIC13.68□□□□□ -0.22
SPTA1P02549 AC009950.1-210ENST00000594622 553 ntTSL 3 BASIC13.68□□□□□ -0.22
SPTA1P02549 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC13.68□□□□□ -0.22
SPTA1P02549 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC13.68□□□□□ -0.22
SPTA1P02549 RDX-218ENST00000544551 4117 ntTSL 2 BASIC13.67□□□□□ -0.22
SPTA1P02549 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
SPTA1P02549 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
SPTA1P02549 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
SPTA1P02549 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
SPTA1P02549 AC092127.1-201ENST00000567093 3455 ntBASIC13.67□□□□□ -0.22
SPTA1P02549 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
SPTA1P02549 ADAMTSL1-204ENST00000380545 1562 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
SPTA1P02549 AC011840.2-201ENST00000563063 1520 ntBASIC13.67□□□□□ -0.22
SPTA1P02549 AC109460.1-201ENST00000567209 1478 ntTSL 3 BASIC13.67□□□□□ -0.22
SPTA1P02549 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
SPTA1P02549 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
SPTA1P02549 UROS-201ENST00000368774 744 ntTSL 2 BASIC13.67□□□□□ -0.22
SPTA1P02549 ESD-202ENST00000378720 1192 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
SPTA1P02549 AC005392.1-201ENST00000419624 500 ntTSL 5 BASIC13.67□□□□□ -0.22
SPTA1P02549 LINC02440-201ENST00000545276 680 ntTSL 2 BASIC13.67□□□□□ -0.22
SPTA1P02549 NPTN-204ENST00000562924 1094 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
SPTA1P02549 TMEM237-202ENST00000409444 5592 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
SPTA1P02549 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
SPTA1P02549 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
SPTA1P02549 AC136759.1-202ENST00000530858 2194 ntBASIC13.67□□□□□ -0.22
SPTA1P02549 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
SPTA1P02549 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
SPTA1P02549 INE2-201ENST00000630399 1874 ntBASIC13.67□□□□□ -0.22
SPTA1P02549 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
SPTA1P02549 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
SPTA1P02549 RTEL1-203ENST00000360203 4623 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
SPTA1P02549 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
SPTA1P02549 LIPE-AS1-204ENST00000594624 1448 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
SPTA1P02549 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC13.67□□□□□ -0.22
SPTA1P02549 TEX264-201ENST00000341333 1340 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
SPTA1P02549 C1QA-202ENST00000402322 976 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
SPTA1P02549 AC009779.1-201ENST00000551138 283 ntBASIC13.66□□□□□ -0.22
SPTA1P02549 AL445483.1-201ENST00000568695 736 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
SPTA1P02549 RPL17P45-201ENST00000586289 509 ntBASIC13.66□□□□□ -0.22
SPTA1P02549 HKR1-225ENST00000592168 566 ntTSL 4 BASIC13.66□□□□□ -0.22
SPTA1P02549 AL161773.1-201ENST00000624845 863 ntBASIC13.66□□□□□ -0.22
SPTA1P02549 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
SPTA1P02549 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC13.66□□□□□ -0.22
SPTA1P02549 HNRNPLL-205ENST00000409636 3980 ntTSL 2 BASIC13.66□□□□□ -0.22
SPTA1P02549 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
SPTA1P02549 DSEL-201ENST00000310045 9531 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
SPTA1P02549 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
SPTA1P02549 TARSL2-201ENST00000335968 3610 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
SPTA1P02549 AC022211.2-201ENST00000585075 2527 ntBASIC13.66□□□□□ -0.22
SPTA1P02549 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
SPTA1P02549 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
SPTA1P02549 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC13.66□□□□□ -0.22
SPTA1P02549 LINC02537-201ENST00000635943 1367 ntTSL 4 BASIC13.66□□□□□ -0.22
SPTA1P02549 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC13.66□□□□□ -0.22
SPTA1P02549 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
SPTA1P02549 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC13.66□□□□□ -0.22
SPTA1P02549 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
SPTA1P02549 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC13.66□□□□□ -0.22
SPTA1P02549 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC13.66□□□□□ -0.22
SPTA1P02549 AC020916.1-201ENST00000587762 1774 ntBASIC13.66□□□□□ -0.22
SPTA1P02549 CLUHP2-201ENST00000426660 1303 ntBASIC13.66□□□□□ -0.22
SPTA1P02549 PAX5-214ENST00000523241 1342 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
SPTA1P02549 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC13.66□□□□□ -0.22
SPTA1P02549 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
SPTA1P02549 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
SPTA1P02549 LSM5-207ENST00000410044 687 ntTSL 3 BASIC13.66□□□□□ -0.22
SPTA1P02549 RPL8P2-201ENST00000430538 502 ntBASIC13.66□□□□□ -0.22
SPTA1P02549 HCFC1-AS1-201ENST00000438219 350 ntTSL 3 BASIC13.66□□□□□ -0.22
SPTA1P02549 LINC00322-201ENST00000450205 699 ntTSL 3 BASIC13.66□□□□□ -0.22
SPTA1P02549 DCST1-AS1-201ENST00000452962 822 ntTSL 2 BASIC13.66□□□□□ -0.22
SPTA1P02549 AC004066.1-201ENST00000502488 802 ntBASIC13.66□□□□□ -0.22
SPTA1P02549 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC13.66□□□□□ -0.22
SPTA1P02549 AC022616.1-201ENST00000518688 554 ntBASIC13.66□□□□□ -0.22
SPTA1P02549 CD59-210ENST00000528700 652 ntAPPRIS P2 TSL 2 BASIC13.66□□□□□ -0.22
SPTA1P02549 SMIM6-201ENST00000556126 866 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
SPTA1P02549 RNASEK-210ENST00000593646 566 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
SPTA1P02549 AC025262.2-201ENST00000623975 1056 ntBASIC13.66□□□□□ -0.22
SPTA1P02549 AC005618.3-201ENST00000624928 458 ntBASIC13.66□□□□□ -0.22
SPTA1P02549 AL590644.3-201ENST00000635428 1228 ntTSL 5 BASIC13.66□□□□□ -0.22
SPTA1P02549 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
SPTA1P02549 ERC1-219ENST00000546231 4390 ntTSL 5 BASIC13.66□□□□□ -0.22
SPTA1P02549 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC13.66□□□□□ -0.22
SPTA1P02549 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC13.66□□□□□ -0.22
SPTA1P02549 VWCE-205ENST00000535710 1437 ntTSL 2 BASIC13.66□□□□□ -0.22
SPTA1P02549 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
SPTA1P02549 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
SPTA1P02549 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
SPTA1P02549 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
SPTA1P02549 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
SPTA1P02549 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
SPTA1P02549 HIST1H1D-201ENST00000244534 666 ntAPPRIS P1 BASIC13.65□□□□□ -0.22
SPTA1P02549 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms