Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SIX3O95343 ITSN2-203ENST00000406921 4563 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
SIX3O95343 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SIX3O95343 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC14.84□□□□□ -0.03
SIX3O95343 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SIX3O95343 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
SIX3O95343 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
SIX3O95343 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC14.84□□□□□ -0.03
SIX3O95343 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SIX3O95343 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SIX3O95343 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC14.84□□□□□ -0.03
SIX3O95343 AL353779.1-201ENST00000434793 351 ntBASIC14.84□□□□□ -0.03
SIX3O95343 VDAC1P7-201ENST00000462417 847 ntBASIC14.84□□□□□ -0.03
SIX3O95343 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC14.84□□□□□ -0.03
SIX3O95343 AC026410.3-201ENST00000514280 936 ntBASIC14.84□□□□□ -0.03
SIX3O95343 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC14.84□□□□□ -0.03
SIX3O95343 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC14.84□□□□□ -0.03
SIX3O95343 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC14.84□□□□□ -0.03
SIX3O95343 RNA5-8SN1-201ENST00000610460 153 ntBASIC14.84□□□□□ -0.03
SIX3O95343 RNA5-8SN5-202ENST00000612463 153 ntBASIC14.84□□□□□ -0.03
SIX3O95343 RNA5-8SN4-201ENST00000613359 153 ntBASIC14.84□□□□□ -0.03
SIX3O95343 AL662799.1-202ENST00000614205 422 ntBASIC14.84□□□□□ -0.03
SIX3O95343 RNA5-8SN5-201ENST00000619471 153 ntBASIC14.84□□□□□ -0.03
SIX3O95343 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC14.84□□□□□ -0.03
SIX3O95343 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SIX3O95343 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
SIX3O95343 CEP131-208ENST00000575907 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
SIX3O95343 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
SIX3O95343 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
SIX3O95343 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
SIX3O95343 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SIX3O95343 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SIX3O95343 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
SIX3O95343 PPP1R16A-201ENST00000292539 2722 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
SIX3O95343 ACE-201ENST00000290863 2479 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
SIX3O95343 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
SIX3O95343 AC027601.5-201ENST00000624065 2482 ntBASIC14.84□□□□□ -0.03
SIX3O95343 GPANK1-205ENST00000375906 2793 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
SIX3O95343 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC14.84□□□□□ -0.03
SIX3O95343 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC14.84□□□□□ -0.03
SIX3O95343 MAP3K11-208ENST00000530153 2830 ntTSL 2 BASIC14.84□□□□□ -0.03
SIX3O95343 MLXIPL-205ENST00000429400 3173 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
SIX3O95343 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.03
SIX3O95343 CHST5-201ENST00000336257 3245 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
SIX3O95343 PLAU-202ENST00000446342 2658 ntAPPRIS ALT2 TSL 2 BASIC14.83□□□□□ -0.03
SIX3O95343 MIR600HG-201ENST00000449175 5984 ntBASIC14.83□□□□□ -0.03
SIX3O95343 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SIX3O95343 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC14.83□□□□□ -0.04
SIX3O95343 RAPGEF4-201ENST00000397081 4299 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SIX3O95343 UNQ6494-202ENST00000617436 2163 ntTSL 2 BASIC14.83□□□□□ -0.04
SIX3O95343 POLR2E-213ENST00000615234 2831 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SIX3O95343 APOLD1-201ENST00000326765 4724 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
SIX3O95343 OR2I1P-209ENST00000641730 5365 ntBASIC14.83□□□□□ -0.04
SIX3O95343 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.04
SIX3O95343 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SIX3O95343 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
SIX3O95343 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
SIX3O95343 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SIX3O95343 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC14.83□□□□□ -0.04
SIX3O95343 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC14.83□□□□□ -0.04
SIX3O95343 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC14.83□□□□□ -0.04
SIX3O95343 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC14.83□□□□□ -0.04
SIX3O95343 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC14.83□□□□□ -0.04
SIX3O95343 TMPRSS11CP-201ENST00000453277 683 ntBASIC14.83□□□□□ -0.04
SIX3O95343 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
SIX3O95343 RN7SL399P-201ENST00000471648 279 ntBASIC14.83□□□□□ -0.04
SIX3O95343 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC14.83□□□□□ -0.04
SIX3O95343 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC14.83□□□□□ -0.04
SIX3O95343 DOC2GP-202ENST00000514950 1163 ntBASIC14.83□□□□□ -0.04
SIX3O95343 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC14.83□□□□□ -0.04
SIX3O95343 TPRX2P-201ENST00000535362 881 ntBASIC14.83□□□□□ -0.04
SIX3O95343 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
SIX3O95343 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC14.83□□□□□ -0.04
SIX3O95343 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC14.83□□□□□ -0.04
SIX3O95343 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC14.83□□□□□ -0.04
SIX3O95343 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
SIX3O95343 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
SIX3O95343 CLK4-201ENST00000316308 2568 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SIX3O95343 C21orf58-202ENST00000397679 2900 ntAPPRIS ALT2 TSL 2 BASIC14.83□□□□□ -0.04
SIX3O95343 HOXC11-202ENST00000546378 3261 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SIX3O95343 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SIX3O95343 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
SIX3O95343 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SIX3O95343 SELENON-203ENST00000374315 4212 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.04
SIX3O95343 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SIX3O95343 ITSN1-210ENST00000399353 3913 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
SIX3O95343 FOXL1-201ENST00000320241 3655 ntAPPRIS P1 BASIC14.82□□□□□ -0.04
SIX3O95343 CYP26A1-202ENST00000371531 2245 ntTSL 2 BASIC14.82□□□□□ -0.04
SIX3O95343 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC14.82□□□□□ -0.04
SIX3O95343 POMT1-204ENST00000402686 3038 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
SIX3O95343 NOS1AP-201ENST00000361897 4931 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
SIX3O95343 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
SIX3O95343 FAM46C-201ENST00000369448 5751 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
SIX3O95343 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
SIX3O95343 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC14.82□□□□□ -0.04
SIX3O95343 C1R-202ENST00000536053 2347 ntTSL 2 BASIC14.82□□□□□ -0.04
SIX3O95343 SMOC2-201ENST00000354536 3150 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
SIX3O95343 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
SIX3O95343 NEDD4L-205ENST00000400345 3647 ntAPPRIS P4 TSL 1 (best) BASIC14.82□□□□□ -0.04
SIX3O95343 LTBP3-221ENST00000532932 3327 ntTSL 2 BASIC14.82□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms