Protein–RNA interactions for Protein: O95197

RTN3, Reticulon-3, humanhuman

Predicted RBP Predictions only

Length 1,032 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3O95197 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
RTN3O95197 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC16.01■□□□□ 0.15
RTN3O95197 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC16.01■□□□□ 0.15
RTN3O95197 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
RTN3O95197 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC16.01■□□□□ 0.15
RTN3O95197 KIRREL3-202ENST00000525704 2474 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
RTN3O95197 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
RTN3O95197 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
RTN3O95197 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC16.01■□□□□ 0.15
RTN3O95197 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC16.01■□□□□ 0.15
RTN3O95197 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC16■□□□□ 0.15
RTN3O95197 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
RTN3O95197 AC073347.1-201ENST00000421633 2643 ntBASIC16■□□□□ 0.15
RTN3O95197 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
RTN3O95197 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
RTN3O95197 PRPH-201ENST00000257860 3245 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
RTN3O95197 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
RTN3O95197 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC16■□□□□ 0.15
RTN3O95197 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
RTN3O95197 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC16■□□□□ 0.15
RTN3O95197 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC16■□□□□ 0.15
RTN3O95197 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC16■□□□□ 0.15
RTN3O95197 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
RTN3O95197 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
RTN3O95197 TPM3P8-201ENST00000330554 643 ntBASIC16■□□□□ 0.15
RTN3O95197 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC16■□□□□ 0.15
RTN3O95197 CD8B2-202ENST00000417670 633 ntBASIC16■□□□□ 0.15
RTN3O95197 FAM21FP-201ENST00000426241 1131 ntBASIC16■□□□□ 0.15
RTN3O95197 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC16■□□□□ 0.15
RTN3O95197 BNIP3P42-201ENST00000454982 569 ntBASIC16■□□□□ 0.15
RTN3O95197 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC16■□□□□ 0.15
RTN3O95197 RNA5SP412-201ENST00000516234 123 ntBASIC16■□□□□ 0.15
RTN3O95197 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
RTN3O95197 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC16■□□□□ 0.15
RTN3O95197 AC023310.1-201ENST00000554836 735 ntBASIC16■□□□□ 0.15
RTN3O95197 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC16■□□□□ 0.15
RTN3O95197 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC16■□□□□ 0.15
RTN3O95197 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC16■□□□□ 0.15
RTN3O95197 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC16■□□□□ 0.15
RTN3O95197 BNIP3P29-201ENST00000598302 571 ntBASIC16■□□□□ 0.15
RTN3O95197 AC011447.5-201ENST00000616168 564 ntBASIC16■□□□□ 0.15
RTN3O95197 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC16■□□□□ 0.15
RTN3O95197 ETV2-208ENST00000621247 941 ntTSL 5 BASIC16■□□□□ 0.15
RTN3O95197 AC138951.2-201ENST00000623455 1161 ntBASIC16■□□□□ 0.15
RTN3O95197 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
RTN3O95197 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC16■□□□□ 0.15
RTN3O95197 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
RTN3O95197 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
RTN3O95197 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC16■□□□□ 0.15
RTN3O95197 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC16■□□□□ 0.15
RTN3O95197 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC16■□□□□ 0.15
RTN3O95197 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
RTN3O95197 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC16■□□□□ 0.15
RTN3O95197 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
RTN3O95197 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC16■□□□□ 0.15
RTN3O95197 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
RTN3O95197 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
RTN3O95197 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
RTN3O95197 OGFRL1-201ENST00000370435 8391 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
RTN3O95197 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
RTN3O95197 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC15.99■□□□□ 0.15
RTN3O95197 CA10-201ENST00000285273 2914 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
RTN3O95197 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
RTN3O95197 AL360270.3-201ENST00000609118 1348 ntBASIC15.99■□□□□ 0.15
RTN3O95197 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
RTN3O95197 TOP3B-201ENST00000357179 2863 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
RTN3O95197 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
RTN3O95197 CLCN7-201ENST00000262318 3717 ntTSL 5 BASIC15.99■□□□□ 0.15
RTN3O95197 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC15.99■□□□□ 0.15
RTN3O95197 AC004706.4-201ENST00000634965 3537 ntAPPRIS P1 BASIC15.99■□□□□ 0.15
RTN3O95197 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC15.99■□□□□ 0.15
RTN3O95197 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
RTN3O95197 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
RTN3O95197 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
RTN3O95197 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
RTN3O95197 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC15.99■□□□□ 0.15
RTN3O95197 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
RTN3O95197 MORN2-204ENST00000409665 648 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
RTN3O95197 AL445430.1-201ENST00000419796 699 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
RTN3O95197 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC15.99■□□□□ 0.15
RTN3O95197 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
RTN3O95197 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
RTN3O95197 AKAP7-204ENST00000431975 2954 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
RTN3O95197 YBX1P6-201ENST00000442962 1002 ntBASIC15.99■□□□□ 0.15
RTN3O95197 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
RTN3O95197 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
RTN3O95197 AC078819.1-201ENST00000547454 765 ntBASIC15.99■□□□□ 0.15
RTN3O95197 AC012085.1-201ENST00000548270 765 ntBASIC15.99■□□□□ 0.15
RTN3O95197 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC15.99■□□□□ 0.15
RTN3O95197 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC15.99■□□□□ 0.15
RTN3O95197 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC15.99■□□□□ 0.15
RTN3O95197 ENPP7P14-201ENST00000621765 1040 ntBASIC15.99■□□□□ 0.15
RTN3O95197 AC008687.7-202ENST00000637404 953 ntBASIC15.99■□□□□ 0.15
RTN3O95197 STRN-202ENST00000379213 2254 ntTSL 5 BASIC15.99■□□□□ 0.15
RTN3O95197 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC15.99■□□□□ 0.15
RTN3O95197 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC15.99■□□□□ 0.15
RTN3O95197 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
RTN3O95197 SIMC1-205ENST00000443967 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
RTN3O95197 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
RTN3O95197 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 51.5 ms