Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
LDB3O75112 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC14.27□□□□□ -0.12
LDB3O75112 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC14.27□□□□□ -0.12
LDB3O75112 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.12
LDB3O75112 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC14.27□□□□□ -0.12
LDB3O75112 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
LDB3O75112 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC14.27□□□□□ -0.12
LDB3O75112 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC14.27□□□□□ -0.12
LDB3O75112 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC14.27□□□□□ -0.12
LDB3O75112 NMUR1-201ENST00000305141 3298 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
LDB3O75112 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
LDB3O75112 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC14.27□□□□□ -0.12
LDB3O75112 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.12
LDB3O75112 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
LDB3O75112 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC14.27□□□□□ -0.12
LDB3O75112 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC14.27□□□□□ -0.12
LDB3O75112 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC14.27□□□□□ -0.12
LDB3O75112 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.13
LDB3O75112 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
LDB3O75112 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC14.27□□□□□ -0.13
LDB3O75112 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.13
LDB3O75112 PGF-202ENST00000405431 666 ntTSL 5 BASIC14.27□□□□□ -0.13
LDB3O75112 EIF3FP3-201ENST00000434851 1086 ntBASIC14.27□□□□□ -0.13
LDB3O75112 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
LDB3O75112 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC14.27□□□□□ -0.13
LDB3O75112 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC14.27□□□□□ -0.13
LDB3O75112 AC022616.1-201ENST00000518688 554 ntBASIC14.27□□□□□ -0.13
LDB3O75112 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
LDB3O75112 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC14.27□□□□□ -0.13
LDB3O75112 AC233724.13-201ENST00000598383 410 ntBASIC14.27□□□□□ -0.13
LDB3O75112 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC14.27□□□□□ -0.13
LDB3O75112 AC145423.3-201ENST00000615987 467 ntBASIC14.27□□□□□ -0.13
LDB3O75112 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
LDB3O75112 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC14.27□□□□□ -0.13
LDB3O75112 ITPRIPL2-201ENST00000381440 7247 ntAPPRIS P1 BASIC14.27□□□□□ -0.13
LDB3O75112 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.13
LDB3O75112 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC14.27□□□□□ -0.13
LDB3O75112 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
LDB3O75112 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
LDB3O75112 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
LDB3O75112 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC14.27□□□□□ -0.13
LDB3O75112 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
LDB3O75112 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
LDB3O75112 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC14.27□□□□□ -0.13
LDB3O75112 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
LDB3O75112 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
LDB3O75112 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC14.27□□□□□ -0.13
LDB3O75112 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
LDB3O75112 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
LDB3O75112 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
LDB3O75112 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
LDB3O75112 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.13
LDB3O75112 TTC28-AS1-219ENST00000454741 5064 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
LDB3O75112 TP73-213ENST00000604479 1623 ntTSL 5 BASIC14.26□□□□□ -0.13
LDB3O75112 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC14.26□□□□□ -0.13
LDB3O75112 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
LDB3O75112 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
LDB3O75112 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
LDB3O75112 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC14.26□□□□□ -0.13
LDB3O75112 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
LDB3O75112 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC14.26□□□□□ -0.13
LDB3O75112 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
LDB3O75112 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC14.26□□□□□ -0.13
LDB3O75112 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
LDB3O75112 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
LDB3O75112 TMEM237-202ENST00000409444 5592 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
LDB3O75112 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
LDB3O75112 AC018665.1-201ENST00000622927 1362 ntBASIC14.26□□□□□ -0.13
LDB3O75112 TGOLN2-203ENST00000398263 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
LDB3O75112 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC14.26□□□□□ -0.13
LDB3O75112 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC14.26□□□□□ -0.13
LDB3O75112 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC14.26□□□□□ -0.13
LDB3O75112 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC14.26□□□□□ -0.13
LDB3O75112 SLCO5A1-201ENST00000260126 9076 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
LDB3O75112 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
LDB3O75112 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
LDB3O75112 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
LDB3O75112 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
LDB3O75112 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC14.26□□□□□ -0.13
LDB3O75112 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC14.26□□□□□ -0.13
LDB3O75112 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC14.26□□□□□ -0.13
LDB3O75112 MXI1-205ENST00000393134 889 ntTSL 2 BASIC14.26□□□□□ -0.13
LDB3O75112 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
LDB3O75112 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
LDB3O75112 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC14.26□□□□□ -0.13
LDB3O75112 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC14.26□□□□□ -0.13
LDB3O75112 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC14.26□□□□□ -0.13
LDB3O75112 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC14.26□□□□□ -0.13
LDB3O75112 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC14.26□□□□□ -0.13
LDB3O75112 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC14.26□□□□□ -0.13
LDB3O75112 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC14.26□□□□□ -0.13
LDB3O75112 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
LDB3O75112 BTNL10-201ENST00000595971 695 ntBASIC14.26□□□□□ -0.13
LDB3O75112 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
LDB3O75112 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
LDB3O75112 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
LDB3O75112 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
LDB3O75112 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC14.26□□□□□ -0.13
LDB3O75112 GPI-205ENST00000586425 1799 ntTSL 5 BASIC14.26□□□□□ -0.13
LDB3O75112 AC007686.3-201ENST00000619017 3487 ntBASIC14.26□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms