Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
PCDHGA1Q9Y5H4 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
PCDHGA1Q9Y5H4 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
PCDHGA1Q9Y5H4 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC14.53□□□□□ -0.08
PCDHGA1Q9Y5H4 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
PCDHGA1Q9Y5H4 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
PCDHGA1Q9Y5H4 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
PCDHGA1Q9Y5H4 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
PCDHGA1Q9Y5H4 SLCO5A1-201ENST00000260126 9076 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
PCDHGA1Q9Y5H4 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC14.53□□□□□ -0.08
PCDHGA1Q9Y5H4 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC14.53□□□□□ -0.08
PCDHGA1Q9Y5H4 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.08
PCDHGA1Q9Y5H4 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
PCDHGA1Q9Y5H4 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC14.52□□□□□ -0.08
PCDHGA1Q9Y5H4 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
PCDHGA1Q9Y5H4 ATP6V0E2-207ENST00000479613 1666 ntTSL 2 BASIC14.52□□□□□ -0.08
PCDHGA1Q9Y5H4 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
PCDHGA1Q9Y5H4 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
PCDHGA1Q9Y5H4 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC14.52□□□□□ -0.08
PCDHGA1Q9Y5H4 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
PCDHGA1Q9Y5H4 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.08
PCDHGA1Q9Y5H4 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC14.52□□□□□ -0.08
PCDHGA1Q9Y5H4 GCK-209ENST00000616242 2260 ntTSL 5 BASIC14.52□□□□□ -0.08
PCDHGA1Q9Y5H4 CXorf40B-202ENST00000370404 1316 ntAPPRIS P2 TSL 2 BASIC14.52□□□□□ -0.08
PCDHGA1Q9Y5H4 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.08
PCDHGA1Q9Y5H4 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
PCDHGA1Q9Y5H4 MRPS22-201ENST00000310776 1120 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.09
PCDHGA1Q9Y5H4 SSR4-203ENST00000370086 643 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
PCDHGA1Q9Y5H4 MRPL43-206ENST00000370236 866 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.09
PCDHGA1Q9Y5H4 MRPL43-207ENST00000370241 824 ntTSL 5 BASIC14.52□□□□□ -0.09
PCDHGA1Q9Y5H4 SDHAF4-201ENST00000370474 1196 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
PCDHGA1Q9Y5H4 AC007952.2-201ENST00000399091 1176 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
PCDHGA1Q9Y5H4 CMC1-204ENST00000423894 549 ntTSL 2 BASIC14.52□□□□□ -0.09
PCDHGA1Q9Y5H4 LINC02046-201ENST00000469812 378 ntTSL 3 BASIC14.52□□□□□ -0.09
PCDHGA1Q9Y5H4 PMP22-206ENST00000494511 872 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
PCDHGA1Q9Y5H4 PRSS30P-205ENST00000506153 699 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
PCDHGA1Q9Y5H4 GATD1-205ENST00000524550 995 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
PCDHGA1Q9Y5H4 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC14.52□□□□□ -0.09
PCDHGA1Q9Y5H4 AC090857.1-201ENST00000527400 390 ntBASIC14.52□□□□□ -0.09
PCDHGA1Q9Y5H4 SLIRP-210ENST00000557431 725 ntTSL 2 BASIC14.52□□□□□ -0.09
PCDHGA1Q9Y5H4 MIR3147-201ENST00000577811 66 ntBASIC14.52□□□□□ -0.09
PCDHGA1Q9Y5H4 MIR4750-201ENST00000584564 56 ntBASIC14.52□□□□□ -0.09
PCDHGA1Q9Y5H4 AP003419.4-201ENST00000616071 517 ntBASIC14.52□□□□□ -0.09
PCDHGA1Q9Y5H4 COX6A1P2-201ENST00000620597 330 ntBASIC14.52□□□□□ -0.09
PCDHGA1Q9Y5H4 ZNF596-213ENST00000640035 1163 ntTSL 5 BASIC14.52□□□□□ -0.09
PCDHGA1Q9Y5H4 NAP1L6-202ENST00000641404 1222 ntBASIC14.52□□□□□ -0.09
PCDHGA1Q9Y5H4 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.09
PCDHGA1Q9Y5H4 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC14.52□□□□□ -0.09
PCDHGA1Q9Y5H4 AL513523.2-202ENST00000427283 2040 ntBASIC14.52□□□□□ -0.09
PCDHGA1Q9Y5H4 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
PCDHGA1Q9Y5H4 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.09
PCDHGA1Q9Y5H4 PLAG1-203ENST00000429357 1899 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
PCDHGA1Q9Y5H4 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
PCDHGA1Q9Y5H4 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC14.52□□□□□ -0.09
PCDHGA1Q9Y5H4 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
PCDHGA1Q9Y5H4 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.09
PCDHGA1Q9Y5H4 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
PCDHGA1Q9Y5H4 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
PCDHGA1Q9Y5H4 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
PCDHGA1Q9Y5H4 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC14.52□□□□□ -0.09
PCDHGA1Q9Y5H4 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC14.52□□□□□ -0.09
PCDHGA1Q9Y5H4 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC14.52□□□□□ -0.09
PCDHGA1Q9Y5H4 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC14.52□□□□□ -0.09
PCDHGA1Q9Y5H4 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC14.51□□□□□ -0.09
PCDHGA1Q9Y5H4 SLC41A3-211ENST00000508835 1480 ntTSL 2 BASIC14.51□□□□□ -0.09
PCDHGA1Q9Y5H4 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC14.51□□□□□ -0.09
PCDHGA1Q9Y5H4 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC14.51□□□□□ -0.09
PCDHGA1Q9Y5H4 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
PCDHGA1Q9Y5H4 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
PCDHGA1Q9Y5H4 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
PCDHGA1Q9Y5H4 AC026691.1-201ENST00000602502 2017 ntBASIC14.51□□□□□ -0.09
PCDHGA1Q9Y5H4 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
PCDHGA1Q9Y5H4 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
PCDHGA1Q9Y5H4 SNHG1-213ENST00000540725 1374 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
PCDHGA1Q9Y5H4 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC14.51□□□□□ -0.09
PCDHGA1Q9Y5H4 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
PCDHGA1Q9Y5H4 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC14.51□□□□□ -0.09
PCDHGA1Q9Y5H4 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
PCDHGA1Q9Y5H4 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
PCDHGA1Q9Y5H4 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
PCDHGA1Q9Y5H4 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
PCDHGA1Q9Y5H4 VPS29-201ENST00000360579 1091 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
PCDHGA1Q9Y5H4 IGHV3-13-201ENST00000390602 430 ntAPPRIS P1 BASIC14.51□□□□□ -0.09
PCDHGA1Q9Y5H4 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC14.51□□□□□ -0.09
PCDHGA1Q9Y5H4 TMEM219-202ENST00000414689 1024 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
PCDHGA1Q9Y5H4 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC14.51□□□□□ -0.09
PCDHGA1Q9Y5H4 AC098935.1-201ENST00000446057 611 ntBASIC14.51□□□□□ -0.09
PCDHGA1Q9Y5H4 NOC2LP1-201ENST00000450578 752 ntBASIC14.51□□□□□ -0.09
PCDHGA1Q9Y5H4 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
PCDHGA1Q9Y5H4 SZRD1-203ENST00000471507 892 ntAPPRIS ALT1 TSL 2 BASIC14.51□□□□□ -0.09
PCDHGA1Q9Y5H4 MCPH1-AS1-203ENST00000525186 869 ntTSL 3 BASIC14.51□□□□□ -0.09
PCDHGA1Q9Y5H4 EEF1D-218ENST00000526838 926 ntAPPRIS ALT2 TSL 2 BASIC14.51□□□□□ -0.09
PCDHGA1Q9Y5H4 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC14.51□□□□□ -0.09
PCDHGA1Q9Y5H4 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
PCDHGA1Q9Y5H4 TMEM219-204ENST00000566848 1292 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
PCDHGA1Q9Y5H4 SNORD3B-2-202ENST00000571722 791 ntBASIC14.51□□□□□ -0.09
PCDHGA1Q9Y5H4 AC011825.3-201ENST00000583184 565 ntTSL 5 BASIC14.51□□□□□ -0.09
PCDHGA1Q9Y5H4 AL358472.3-201ENST00000608147 415 ntBASIC14.51□□□□□ -0.09
PCDHGA1Q9Y5H4 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC14.51□□□□□ -0.09
PCDHGA1Q9Y5H4 AC103691.2-201ENST00000618824 433 ntBASIC14.51□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 44.5 ms