Protein–RNA interactions for Protein: Q9Y4P1

ATG4B, Cysteine protease ATG4B, humanhuman

Predictions only

Length 393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4BQ9Y4P1 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC14.37□□□□□ -0.11
ATG4BQ9Y4P1 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC14.37□□□□□ -0.11
ATG4BQ9Y4P1 MSTO2P-201ENST00000314835 1709 ntBASIC14.37□□□□□ -0.11
ATG4BQ9Y4P1 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC14.37□□□□□ -0.11
ATG4BQ9Y4P1 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
ATG4BQ9Y4P1 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
ATG4BQ9Y4P1 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
ATG4BQ9Y4P1 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
ATG4BQ9Y4P1 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
ATG4BQ9Y4P1 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
ATG4BQ9Y4P1 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
ATG4BQ9Y4P1 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
ATG4BQ9Y4P1 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC14.37□□□□□ -0.11
ATG4BQ9Y4P1 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC14.37□□□□□ -0.11
ATG4BQ9Y4P1 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
ATG4BQ9Y4P1 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
ATG4BQ9Y4P1 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
ATG4BQ9Y4P1 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
ATG4BQ9Y4P1 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
ATG4BQ9Y4P1 CICP14-201ENST00000629111 2732 ntBASIC14.36□□□□□ -0.11
ATG4BQ9Y4P1 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
ATG4BQ9Y4P1 USP35-204ENST00000530267 2419 ntTSL 2 BASIC14.36□□□□□ -0.11
ATG4BQ9Y4P1 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
ATG4BQ9Y4P1 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC14.36□□□□□ -0.11
ATG4BQ9Y4P1 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
ATG4BQ9Y4P1 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC14.36□□□□□ -0.11
ATG4BQ9Y4P1 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
ATG4BQ9Y4P1 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC14.36□□□□□ -0.11
ATG4BQ9Y4P1 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC14.36□□□□□ -0.11
ATG4BQ9Y4P1 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC14.36□□□□□ -0.11
ATG4BQ9Y4P1 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
ATG4BQ9Y4P1 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
ATG4BQ9Y4P1 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
ATG4BQ9Y4P1 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
ATG4BQ9Y4P1 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
ATG4BQ9Y4P1 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
ATG4BQ9Y4P1 RPS15-201ENST00000233609 534 ntTSL 2 BASIC14.36□□□□□ -0.11
ATG4BQ9Y4P1 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
ATG4BQ9Y4P1 APOA1-205ENST00000375329 927 ntTSL 2 BASIC14.36□□□□□ -0.11
ATG4BQ9Y4P1 PGGT1BP2-201ENST00000398621 1028 ntBASIC14.36□□□□□ -0.11
ATG4BQ9Y4P1 WBP2-203ENST00000433525 928 ntTSL 2 BASIC14.36□□□□□ -0.11
ATG4BQ9Y4P1 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
ATG4BQ9Y4P1 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC14.36□□□□□ -0.11
ATG4BQ9Y4P1 KRT17P7-201ENST00000451704 1104 ntBASIC14.36□□□□□ -0.11
ATG4BQ9Y4P1 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC14.36□□□□□ -0.11
ATG4BQ9Y4P1 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
ATG4BQ9Y4P1 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC14.36□□□□□ -0.11
ATG4BQ9Y4P1 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC14.36□□□□□ -0.11
ATG4BQ9Y4P1 CFL1-212ENST00000531413 636 ntTSL 3 BASIC14.36□□□□□ -0.11
ATG4BQ9Y4P1 POLE2-203ENST00000553805 496 ntTSL 2 BASIC14.36□□□□□ -0.11
ATG4BQ9Y4P1 AC009486.1-201ENST00000569860 813 ntBASIC14.36□□□□□ -0.11
ATG4BQ9Y4P1 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC14.36□□□□□ -0.11
ATG4BQ9Y4P1 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC14.36□□□□□ -0.11
ATG4BQ9Y4P1 RPS15-205ENST00000586686 562 ntTSL 5 BASIC14.36□□□□□ -0.11
ATG4BQ9Y4P1 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC14.36□□□□□ -0.11
ATG4BQ9Y4P1 RPS15-208ENST00000591804 711 ntTSL 5 BASIC14.36□□□□□ -0.11
ATG4BQ9Y4P1 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
ATG4BQ9Y4P1 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC14.36□□□□□ -0.11
ATG4BQ9Y4P1 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
ATG4BQ9Y4P1 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
ATG4BQ9Y4P1 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
ATG4BQ9Y4P1 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC14.36□□□□□ -0.11
ATG4BQ9Y4P1 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC14.36□□□□□ -0.11
ATG4BQ9Y4P1 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC14.36□□□□□ -0.11
ATG4BQ9Y4P1 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC14.36□□□□□ -0.11
ATG4BQ9Y4P1 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
ATG4BQ9Y4P1 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
ATG4BQ9Y4P1 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC14.36□□□□□ -0.11
ATG4BQ9Y4P1 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC14.36□□□□□ -0.11
ATG4BQ9Y4P1 AL136379.1-201ENST00000623471 2642 ntBASIC14.36□□□□□ -0.11
ATG4BQ9Y4P1 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
ATG4BQ9Y4P1 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
ATG4BQ9Y4P1 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC14.36□□□□□ -0.11
ATG4BQ9Y4P1 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
ATG4BQ9Y4P1 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC14.36□□□□□ -0.11
ATG4BQ9Y4P1 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
ATG4BQ9Y4P1 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC14.36□□□□□ -0.11
ATG4BQ9Y4P1 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
ATG4BQ9Y4P1 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
ATG4BQ9Y4P1 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
ATG4BQ9Y4P1 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC14.36□□□□□ -0.11
ATG4BQ9Y4P1 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
ATG4BQ9Y4P1 MIR600HG-201ENST00000449175 5984 ntBASIC14.35□□□□□ -0.11
ATG4BQ9Y4P1 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC14.35□□□□□ -0.11
ATG4BQ9Y4P1 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
ATG4BQ9Y4P1 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
ATG4BQ9Y4P1 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
ATG4BQ9Y4P1 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
ATG4BQ9Y4P1 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
ATG4BQ9Y4P1 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
ATG4BQ9Y4P1 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
ATG4BQ9Y4P1 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC14.35□□□□□ -0.11
ATG4BQ9Y4P1 AC007686.3-201ENST00000619017 3487 ntBASIC14.35□□□□□ -0.11
ATG4BQ9Y4P1 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
ATG4BQ9Y4P1 PCDHA3-202ENST00000532566 4594 ntBASIC14.35□□□□□ -0.11
ATG4BQ9Y4P1 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
ATG4BQ9Y4P1 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
ATG4BQ9Y4P1 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
ATG4BQ9Y4P1 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
ATG4BQ9Y4P1 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC14.35□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 45.2 ms