Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 ZNF516-201ENST00000443185 8118 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
FOXA2Q9Y261 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC12.31□□□□□ -0.44
FOXA2Q9Y261 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC12.31□□□□□ -0.44
FOXA2Q9Y261 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
FOXA2Q9Y261 PHF24-201ENST00000242315 5718 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
FOXA2Q9Y261 UBR2-201ENST00000372899 7857 ntAPPRIS P2 TSL 1 (best) BASIC12.31□□□□□ -0.44
FOXA2Q9Y261 UBR2-202ENST00000372901 7857 ntAPPRIS ALT1 TSL 5 BASIC12.31□□□□□ -0.44
FOXA2Q9Y261 AC113367.3-201ENST00000508316 1912 ntBASIC12.31□□□□□ -0.44
FOXA2Q9Y261 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC12.31□□□□□ -0.44
FOXA2Q9Y261 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
FOXA2Q9Y261 AL359258.3-201ENST00000622910 2331 ntBASIC12.31□□□□□ -0.44
FOXA2Q9Y261 LHFPL4-201ENST00000287585 4880 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
FOXA2Q9Y261 LILRP1-201ENST00000444199 1370 ntBASIC12.3□□□□□ -0.44
FOXA2Q9Y261 TDG-209ENST00000544861 1387 ntTSL 2 BASIC12.3□□□□□ -0.44
FOXA2Q9Y261 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC12.3□□□□□ -0.44
FOXA2Q9Y261 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
FOXA2Q9Y261 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
FOXA2Q9Y261 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
FOXA2Q9Y261 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC12.3□□□□□ -0.44
FOXA2Q9Y261 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
FOXA2Q9Y261 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC12.3□□□□□ -0.44
FOXA2Q9Y261 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC12.3□□□□□ -0.44
FOXA2Q9Y261 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
FOXA2Q9Y261 E2F3-201ENST00000346618 4749 ntAPPRIS P3 TSL 1 (best) BASIC12.3□□□□□ -0.44
FOXA2Q9Y261 POU2F2-207ENST00000529067 2657 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
FOXA2Q9Y261 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
FOXA2Q9Y261 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC12.3□□□□□ -0.44
FOXA2Q9Y261 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC12.3□□□□□ -0.44
FOXA2Q9Y261 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
FOXA2Q9Y261 FRMD3-201ENST00000304195 5297 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
FOXA2Q9Y261 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
FOXA2Q9Y261 SPDYE19P-201ENST00000338590 713 ntBASIC12.3□□□□□ -0.44
FOXA2Q9Y261 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC12.3□□□□□ -0.44
FOXA2Q9Y261 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC12.3□□□□□ -0.44
FOXA2Q9Y261 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
FOXA2Q9Y261 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
FOXA2Q9Y261 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC12.3□□□□□ -0.44
FOXA2Q9Y261 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
FOXA2Q9Y261 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
FOXA2Q9Y261 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
FOXA2Q9Y261 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC12.3□□□□□ -0.44
FOXA2Q9Y261 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC12.3□□□□□ -0.44
FOXA2Q9Y261 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC12.3□□□□□ -0.44
FOXA2Q9Y261 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC12.3□□□□□ -0.44
FOXA2Q9Y261 TERF1P3-201ENST00000505638 1227 ntBASIC12.3□□□□□ -0.44
FOXA2Q9Y261 SERBP1P5-201ENST00000510079 1181 ntBASIC12.3□□□□□ -0.44
FOXA2Q9Y261 SPDYE18-201ENST00000510091 1050 ntBASIC12.3□□□□□ -0.44
FOXA2Q9Y261 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC12.3□□□□□ -0.44
FOXA2Q9Y261 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC12.3□□□□□ -0.44
FOXA2Q9Y261 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC12.3□□□□□ -0.44
FOXA2Q9Y261 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
FOXA2Q9Y261 AC036164.1-201ENST00000570544 333 ntBASIC12.3□□□□□ -0.44
FOXA2Q9Y261 ARL16-202ENST00000570561 768 ntTSL 2 BASIC12.3□□□□□ -0.44
FOXA2Q9Y261 SAMD11P1-201ENST00000571429 661 ntBASIC12.3□□□□□ -0.44
FOXA2Q9Y261 AC000095.1-201ENST00000603208 874 ntBASIC12.3□□□□□ -0.44
FOXA2Q9Y261 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC12.3□□□□□ -0.44
FOXA2Q9Y261 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
FOXA2Q9Y261 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC12.3□□□□□ -0.44
FOXA2Q9Y261 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC12.3□□□□□ -0.44
FOXA2Q9Y261 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
FOXA2Q9Y261 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC12.3□□□□□ -0.44
FOXA2Q9Y261 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
FOXA2Q9Y261 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC12.3□□□□□ -0.44
FOXA2Q9Y261 ELP1-201ENST00000374647 5905 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
FOXA2Q9Y261 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
FOXA2Q9Y261 AC018529.2-202ENST00000611482 3087 ntBASIC12.3□□□□□ -0.44
FOXA2Q9Y261 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC12.3□□□□□ -0.44
FOXA2Q9Y261 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
FOXA2Q9Y261 SMARCA2-214ENST00000450198 5602 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
FOXA2Q9Y261 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC12.3□□□□□ -0.44
FOXA2Q9Y261 MTMR6-201ENST00000381801 5659 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
FOXA2Q9Y261 TTC39A-208ENST00000413473 2718 ntAPPRIS P4 TSL 1 (best) BASIC12.3□□□□□ -0.44
FOXA2Q9Y261 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC12.3□□□□□ -0.44
FOXA2Q9Y261 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
FOXA2Q9Y261 GLUL-203ENST00000339526 3942 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
FOXA2Q9Y261 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC12.29□□□□□ -0.44
FOXA2Q9Y261 C1R-202ENST00000536053 2347 ntTSL 2 BASIC12.29□□□□□ -0.44
FOXA2Q9Y261 SCUBE1-202ENST00000360835 9808 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
FOXA2Q9Y261 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
FOXA2Q9Y261 TMTC1-207ENST00000552618 3915 ntTSL 5 BASIC12.29□□□□□ -0.44
FOXA2Q9Y261 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC12.29□□□□□ -0.44
FOXA2Q9Y261 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
FOXA2Q9Y261 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC12.29□□□□□ -0.44
FOXA2Q9Y261 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC12.29□□□□□ -0.44
FOXA2Q9Y261 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
FOXA2Q9Y261 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
FOXA2Q9Y261 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
FOXA2Q9Y261 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
FOXA2Q9Y261 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
FOXA2Q9Y261 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
FOXA2Q9Y261 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC12.29□□□□□ -0.44
FOXA2Q9Y261 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC12.29□□□□□ -0.44
FOXA2Q9Y261 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC12.29□□□□□ -0.44
FOXA2Q9Y261 TMPRSS11CP-201ENST00000453277 683 ntBASIC12.29□□□□□ -0.44
FOXA2Q9Y261 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC12.29□□□□□ -0.44
FOXA2Q9Y261 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC12.29□□□□□ -0.44
FOXA2Q9Y261 FTH1-202ENST00000526640 786 ntTSL 2 BASIC12.29□□□□□ -0.44
FOXA2Q9Y261 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC12.29□□□□□ -0.44
FOXA2Q9Y261 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC12.29□□□□□ -0.44
FOXA2Q9Y261 LINC02560-201ENST00000596379 459 ntBASIC12.29□□□□□ -0.44
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms