Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 AL355385.1-201ENST00000606123 409 ntBASIC16.2■□□□□ 0.18
SIX2Q9NPC8 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
SIX2Q9NPC8 CU634019.7-201ENST00000624153 1185 ntBASIC16.2■□□□□ 0.18
SIX2Q9NPC8 FP236241.2-201ENST00000624906 1185 ntBASIC16.2■□□□□ 0.18
SIX2Q9NPC8 ABBA01031660.1-201ENST00000635219 756 ntBASIC16.2■□□□□ 0.18
SIX2Q9NPC8 HTR3A-206ENST00000506841 2221 ntTSL 2 BASIC16.2■□□□□ 0.18
SIX2Q9NPC8 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
SIX2Q9NPC8 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
SIX2Q9NPC8 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
SIX2Q9NPC8 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
SIX2Q9NPC8 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SIX2Q9NPC8 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
SIX2Q9NPC8 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SIX2Q9NPC8 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC16.2■□□□□ 0.18
SIX2Q9NPC8 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC16.2■□□□□ 0.18
SIX2Q9NPC8 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
SIX2Q9NPC8 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
SIX2Q9NPC8 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
SIX2Q9NPC8 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SIX2Q9NPC8 ZNF785-202ENST00000470110 2867 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.18
SIX2Q9NPC8 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SIX2Q9NPC8 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC16.19■□□□□ 0.18
SIX2Q9NPC8 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC16.19■□□□□ 0.18
SIX2Q9NPC8 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC16.19■□□□□ 0.18
SIX2Q9NPC8 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
SIX2Q9NPC8 TKT-201ENST00000296289 1931 ntTSL 5 BASIC16.19■□□□□ 0.18
SIX2Q9NPC8 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
SIX2Q9NPC8 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
SIX2Q9NPC8 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
SIX2Q9NPC8 RGPD6-202ENST00000330331 2848 ntTSL 2 BASIC16.19■□□□□ 0.18
SIX2Q9NPC8 RGPD8-202ENST00000330575 2848 ntTSL 2 BASIC16.19■□□□□ 0.18
SIX2Q9NPC8 FSIP1-201ENST00000350221 2805 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
SIX2Q9NPC8 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
SIX2Q9NPC8 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
SIX2Q9NPC8 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
SIX2Q9NPC8 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SIX2Q9NPC8 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC16.19■□□□□ 0.18
SIX2Q9NPC8 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
SIX2Q9NPC8 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SIX2Q9NPC8 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SIX2Q9NPC8 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SIX2Q9NPC8 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
SIX2Q9NPC8 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC16.19■□□□□ 0.18
SIX2Q9NPC8 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC16.19■□□□□ 0.18
SIX2Q9NPC8 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
SIX2Q9NPC8 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC16.19■□□□□ 0.18
SIX2Q9NPC8 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC16.19■□□□□ 0.18
SIX2Q9NPC8 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
SIX2Q9NPC8 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC16.19■□□□□ 0.18
SIX2Q9NPC8 POMT1-204ENST00000402686 3038 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SIX2Q9NPC8 CNOT10-201ENST00000328834 2815 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SIX2Q9NPC8 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
SIX2Q9NPC8 ZC3HAV1-204ENST00000471652 3182 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
SIX2Q9NPC8 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
SIX2Q9NPC8 PRKAG2-215ENST00000492843 2699 ntTSL 5 BASIC16.19■□□□□ 0.18
SIX2Q9NPC8 PPP1R13L-202ENST00000418234 3118 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SIX2Q9NPC8 KRT8P35-201ENST00000483942 1338 ntBASIC16.19■□□□□ 0.18
SIX2Q9NPC8 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
SIX2Q9NPC8 HPGD-202ENST00000296522 3027 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SIX2Q9NPC8 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
SIX2Q9NPC8 AGGF1P1-201ENST00000509500 2073 ntBASIC16.18■□□□□ 0.18
SIX2Q9NPC8 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC16.18■□□□□ 0.18
SIX2Q9NPC8 GPAT3-201ENST00000264409 2625 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SIX2Q9NPC8 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC16.18■□□□□ 0.18
SIX2Q9NPC8 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC16.18■□□□□ 0.18
SIX2Q9NPC8 FGFR3-203ENST00000352904 3733 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
SIX2Q9NPC8 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
SIX2Q9NPC8 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
SIX2Q9NPC8 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SIX2Q9NPC8 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
SIX2Q9NPC8 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC16.18■□□□□ 0.18
SIX2Q9NPC8 SOX7-201ENST00000304501 3216 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SIX2Q9NPC8 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC16.18■□□□□ 0.18
SIX2Q9NPC8 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
SIX2Q9NPC8 HTR7-202ENST00000336152 3126 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
SIX2Q9NPC8 PDE7A-203ENST00000401827 3673 ntAPPRIS ALT1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SIX2Q9NPC8 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC16.18■□□□□ 0.18
SIX2Q9NPC8 FAM47E-STBD1-204ENST00000515604 3029 ntAPPRIS P2 TSL 2 BASIC16.18■□□□□ 0.18
SIX2Q9NPC8 PREP-201ENST00000369110 2905 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SIX2Q9NPC8 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SIX2Q9NPC8 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SIX2Q9NPC8 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SIX2Q9NPC8 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
SIX2Q9NPC8 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SIX2Q9NPC8 AL162726.2-201ENST00000438986 1017 ntBASIC16.18■□□□□ 0.18
SIX2Q9NPC8 SERP1-201ENST00000239944 3171 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SIX2Q9NPC8 LINC01184-204ENST00000501702 2977 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
SIX2Q9NPC8 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
SIX2Q9NPC8 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
SIX2Q9NPC8 SIGLEC9-202ENST00000440804 1960 ntAPPRIS ALT2 TSL 2 BASIC16.18■□□□□ 0.18
SIX2Q9NPC8 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
SIX2Q9NPC8 LRRC59-203ENST00000576448 1531 ntBASIC16.18■□□□□ 0.18
SIX2Q9NPC8 KRBOX4-202ENST00000344302 2774 ntAPPRIS ALT2 TSL 2 BASIC16.18■□□□□ 0.18
SIX2Q9NPC8 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
SIX2Q9NPC8 POU6F1-208ENST00000550824 2664 ntTSL 5 BASIC16.18■□□□□ 0.18
SIX2Q9NPC8 RNF182-208ENST00000544682 3495 ntAPPRIS P1 TSL 4 BASIC16.18■□□□□ 0.18
SIX2Q9NPC8 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
SIX2Q9NPC8 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SIX2Q9NPC8 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
SIX2Q9NPC8 GPSM1-202ENST00000354753 3533 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 88.6 ms